AT5G59600

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G59600

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00138570	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	OrthoFinder output from all 47 species
AMTR_s00010p00113430	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g18485...	0.02	OrthoFinder output from all 47 species
AMTR_s00010p00260120	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g74600,...	0.03	OrthoFinder output from all 47 species
AMTR_s00040p00174700	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g13650...	0.03	OrthoFinder output from all 47 species
AMTR_s00077p00191560	OTP82,...	Pentatricopeptide repeat-containing protein DOT4,...	0.02	OrthoFinder output from all 47 species
AMTR_s00095p00039180	OTP86,...	Pentatricopeptide repeat-containing protein At3g63370,...	0.03	OrthoFinder output from all 47 species
AMTR_s00439p00011030	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At5g04780,...	0.04	OrthoFinder output from all 47 species
AMTR_s00587p00011650	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.02	OrthoFinder output from all 47 species
AT3G61170	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g003839	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g067822	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g40807	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g12476	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g16335	EMB2758	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g28362	VAC1, ECB2, ATECB2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g36933	CRR22	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g05010	CRR22	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g06616	No alias	component *(MED19) of head module of MEDIATOR...	0.02	OrthoFinder output from all 47 species
Aob_g23363	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g28388	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g33113	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene01199.t1	OTP86, Aspi01Gene01199	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene08005.t1	Aspi01Gene08005	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene11731.t1	Aspi01Gene11731	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene14575.t2	CRR22, Aspi01Gene14575	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene18627.t1	Aspi01Gene18627	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene18986.t1	MEF21, Aspi01Gene18986	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene20498.t1	CRR2, Aspi01Gene20498	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene27883.t1	Aspi01Gene27883	ssDNA-binding protein *(OSB) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene34698.t1	Aspi01Gene34698	ssDNA-binding protein *(OSB) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene37377.t1	Aspi01Gene37377	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene61369.t1	CRR22, Aspi01Gene61369	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0012.g012909	No alias	not classified & original description: CDS=1-2286	0.03	OrthoFinder output from all 47 species
Azfi_s0090.g042642	No alias	not classified & original description: CDS=39-695	0.02	OrthoFinder output from all 47 species
Azfi_s0092.g042964	No alias	not classified & original description: CDS=1-1536	0.03	OrthoFinder output from all 47 species
Azfi_s0129.g048869	No alias	not classified & original description: CDS=1-2157	0.04	OrthoFinder output from all 47 species
Azfi_s0768.g086029	No alias	not classified & original description: CDS=1-2331	0.03	OrthoFinder output from all 47 species
Azfi_s3130.g114639	No alias	not classified & original description: CDS=34-2442	0.03	OrthoFinder output from all 47 species
Cba_g75409	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.04G018200.1	OTP84, Ceric.04G018200	not classified & original description: pacid=50630783...	0.03	OrthoFinder output from all 47 species
Ceric.06G003100.1	Ceric.06G003100	not classified & original description: pacid=50620504...	0.03	OrthoFinder output from all 47 species
Ceric.1Z254100.1	Ceric.1Z254100	not classified & original description: pacid=50632850...	0.02	OrthoFinder output from all 47 species
Dac_g30474	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g07839	EMB2758	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g50257	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g17760	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g24399	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g30657	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g32845	No alias	ssDNA-binding protein *(OSB) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g39568	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g00845	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g08416	CRR22	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g28224	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g31440	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g34246	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g02677	REME1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g41474	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004758	No alias	not classified & original description: CDS=1-2223	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012043	VAC1, ECB2, ATECB2	not classified & original description: CDS=1-1878	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0049.g013695	No alias	not classified & original description: CDS=1-2949	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016959	No alias	not classified & original description: CDS=1-1596	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0093.g019001	No alias	not classified & original description: CDS=1-2865	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0223.g026268	No alias	not classified & original description: CDS=1-2328	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0226.g026331	No alias	not classified & original description: CDS=1-2598	0.03	OrthoFinder output from all 47 species
Sam_g03383	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g11913	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g14049	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g21956	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g30157	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g36251	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g37180	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g39247	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g50428	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo72131	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.02	OrthoFinder output from all 47 species
Smo77340	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	OrthoFinder output from all 47 species
Solyc10g005090.3.1	Solyc10g005090	Putative pentatricopeptide repeat-containing protein...	0.03	OrthoFinder output from all 47 species
Spa_g45537	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e021453_P001	CRR28, Zm00001e021453	Pentatricopeptide repeat-containing protein At5g06540...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	None	Extended
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	RCA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	251	298
IPR002885	Pentatricopeptide_repeat	182	229
IPR002885	Pentatricopeptide_repeat	353	400
IPR002885	Pentatricopeptide_repeat	155	178
IPR002885	Pentatricopeptide_repeat	327	348
IPR002885	Pentatricopeptide_repeat	428	452
IPR002885	Pentatricopeptide_repeat	87	113
IPR002885	Pentatricopeptide_repeat	60	82

External Links

No external refs found!

AT5G59600

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation