Aliases : LSH5
Description : Protein of unknown function (DUF640)
Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT5G58500 | |
Cluster | HCCA: Cluster_56 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00067p00052610 | LSH6,... | Protein G1-like2 OS=Oryza sativa subsp. japonica | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00153p00047660 | evm_27.TU.AmTr_v1... | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00155p00022580 | LSH6,... | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.04 | OrthoFinder output from all 47 species | |
AT1G16910 | LSH8 | Protein of unknown function (DUF640) | 0.01 | OrthoFinder output from all 47 species | |
AT2G42610 | LSH10 | Protein of unknown function (DUF640) | 0.04 | OrthoFinder output from all 47 species | |
Als_g17249 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0639.g080525 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g24783 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.14G090800.1 | LSH6, Ceric.14G090800 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g03257 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Dde_g15713 | LSH6 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01020708001 | LSH10 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01021215001 | LSH10 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01023521001 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01024677001 | LSH6 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os01g61310.1 | LSH6, LOC_Os01g61310 | Protein G1-like7 OS=Oryza sativa subsp. indica... | 0.01 | OrthoFinder output from all 47 species | |
LOC_Os05g28040.1 | LSH6, LOC_Os05g28040 | Protein G1-like9 OS=Oryza sativa subsp. indica... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os05g39500.1 | LSH6, LOC_Os05g39500 | Protein G1-like8 OS=Oryza sativa subsp. japonica... | 0.03 | OrthoFinder output from all 47 species | |
Len_g03807 | LSH1 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Mp2g00330.1 | LSH4 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.01 | OrthoFinder output from all 47 species | |
Pnu_g12268 | LSH6 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Solyc05g055020.4.1 | LSH1, Solyc05g055020 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1... | 0.03 | OrthoFinder output from all 47 species | |
Solyc06g083860.2.1 | LSH3, Solyc06g083860 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.02 | OrthoFinder output from all 47 species | |
Solyc07g150147.1.1 | LSH10, Solyc07g150147 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.04 | OrthoFinder output from all 47 species | |
Solyc10g008000.1.1 | LSH10, Solyc10g008000 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.05 | OrthoFinder output from all 47 species | |
Solyc12g014260.1.1 | LSH10, Solyc12g014260 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e027222_P001 | LSH6, Zm00001e027222 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e031512_P001 | LSH6, Zm00001e031512 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0004126 | cytidine deaminase activity | IEP | HCCA |
MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | HCCA |
MF | GO:0004866 | endopeptidase inhibitor activity | IEP | HCCA |
MF | GO:0004867 | serine-type endopeptidase inhibitor activity | IEP | HCCA |
CC | GO:0005615 | extracellular space | IEP | HCCA |
CC | GO:0005874 | microtubule | IEP | HCCA |
BP | GO:0006213 | pyrimidine nucleoside metabolic process | IEP | HCCA |
BP | GO:0006216 | cytidine catabolic process | IEP | HCCA |
BP | GO:0006624 | vacuolar protein processing | IEP | HCCA |
BP | GO:0006949 | syncytium formation | IEP | HCCA |
MF | GO:0008171 | O-methyltransferase activity | IEP | HCCA |
BP | GO:0009116 | nucleoside metabolic process | IEP | HCCA |
BP | GO:0009119 | ribonucleoside metabolic process | IEP | HCCA |
BP | GO:0009164 | nucleoside catabolic process | IEP | HCCA |
BP | GO:0009686 | gibberellin biosynthetic process | IEP | HCCA |
BP | GO:0009698 | phenylpropanoid metabolic process | IEP | HCCA |
BP | GO:0009699 | phenylpropanoid biosynthetic process | IEP | HCCA |
BP | GO:0009806 | lignan metabolic process | IEP | HCCA |
BP | GO:0009807 | lignan biosynthetic process | IEP | HCCA |
BP | GO:0009809 | lignin biosynthetic process | IEP | HCCA |
BP | GO:0009972 | cytidine deamination | IEP | HCCA |
BP | GO:0010214 | seed coat development | IEP | HCCA |
BP | GO:0016485 | protein processing | IEP | HCCA |
MF | GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | IEP | HCCA |
MF | GO:0016787 | hydrolase activity | IEP | HCCA |
MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | HCCA |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | HCCA |
CC | GO:0019005 | SCF ubiquitin ligase complex | IEP | HCCA |
MF | GO:0019239 | deaminase activity | IEP | HCCA |
BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
MF | GO:0019825 | oxygen binding | IEP | HCCA |
MF | GO:0030414 | peptidase inhibitor activity | IEP | HCCA |
BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
BP | GO:0034656 | nucleobase-containing small molecule catabolic process | IEP | HCCA |
BP | GO:0042454 | ribonucleoside catabolic process | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
BP | GO:0044282 | small molecule catabolic process | IEP | HCCA |
BP | GO:0044550 | secondary metabolite biosynthetic process | IEP | HCCA |
BP | GO:0046087 | cytidine metabolic process | IEP | HCCA |
BP | GO:0046131 | pyrimidine ribonucleoside metabolic process | IEP | HCCA |
BP | GO:0046133 | pyrimidine ribonucleoside catabolic process | IEP | HCCA |
BP | GO:0046135 | pyrimidine nucleoside catabolic process | IEP | HCCA |
BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
MF | GO:0050113 | inositol oxygenase activity | IEP | HCCA |
MF | GO:0061134 | peptidase regulator activity | IEP | HCCA |
MF | GO:0061135 | endopeptidase regulator activity | IEP | HCCA |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072529 | pyrimidine-containing compound catabolic process | IEP | HCCA |
BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | HCCA |
BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | HCCA |
BP | GO:1901657 | glycosyl compound metabolic process | IEP | HCCA |
BP | GO:1901658 | glycosyl compound catabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR006936 | ALOG_dom | 13 | 133 |
No external refs found! |