1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G57120

AT5G57120


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink).


Gene families : OG0004086 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004086_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G57120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00029780 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
Cre01.g055400 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os12g41930.1 LOC_Os12g41930 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp7g14560.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g27360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g008330.3.1 Solyc07g008330 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Zm00001e018124_P001 Zm00001e018124 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0010015 root morphogenesis IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
InterPro domains Description Start Stop
IPR007718 Srp40_C 253 323
No external refs found!