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AT5G56510 (APUM12, PUM12)


Aliases : APUM12, PUM12

Description : pumilio 12


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G56510

Target Alias Description ECC score Gene Family Method Actions
AT1G22240 APUM8, PUM8 pumilio 8 0.04 OrthoFinder output from all 47 species
Azfi_s0040.g026500 APUM12, PUM12 not classified & original description: CDS=1-2874 0.01 OrthoFinder output from all 47 species
Dcu_g01979 APUM12, PUM12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g13713 APUM12, PUM12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g63452 PUM7, APUM7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002092 APUM12, PUM12 not classified & original description: CDS=226-2811 0.03 OrthoFinder output from all 47 species
Tin_g03517 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e024450_P001 APUM12, PUM12,... Pumilio homolog 12 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0010528 regulation of transposition IEP HCCA
BP GO:0010529 negative regulation of transposition IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035197 siRNA binding IEP HCCA
BP GO:0048441 petal development IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
MF GO:0061980 regulatory RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 279 311
IPR001313 Pumilio_RNA-bd_rpt 465 484
IPR001313 Pumilio_RNA-bd_rpt 357 385
IPR001313 Pumilio_RNA-bd_rpt 313 347
IPR001313 Pumilio_RNA-bd_rpt 394 414
IPR001313 Pumilio_RNA-bd_rpt 427 456
No external refs found!