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  5. AT5G56260

AT5G56260


Description : Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase


Gene families : OG0004416 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004416_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G56260

Target Alias Description ECC score Gene Family Method Actions
Ala_g26773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G044800.1 Ceric.04G044800 not classified & original description: pacid=50632388... 0.06 OrthoFinder output from all 47 species
Cre13.g578150 No alias Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3... 0.05 OrthoFinder output from all 47 species
GSVIVT01019090001 No alias Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2... 0.03 OrthoFinder output from all 47 species
Gb_40109 No alias Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 1... 0.03 OrthoFinder output from all 47 species
Zm00001e016899_P001 Zm00001e016899 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000303 response to superoxide IEP HCCA
BP GO:0000305 response to oxygen radical IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003994 aconitate hydratase activity IEP HCCA
MF GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004474 malate synthase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006101 citrate metabolic process IEP HCCA
BP GO:0006102 isocitrate metabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0006775 fat-soluble vitamin metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009685 gibberellin metabolic process IEP HCCA
BP GO:0009686 gibberellin biosynthetic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009740 gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009828 plant-type cell wall loosening IEP HCCA
BP GO:0009831 plant-type cell wall modification involved in multidimensional cell growth IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0010039 response to iron ion IEP HCCA
BP GO:0010189 vitamin E biosynthetic process IEP HCCA
BP GO:0010476 gibberellin mediated signaling pathway IEP HCCA
BP GO:0010565 regulation of cellular ketone metabolic process IEP HCCA
BP GO:0016101 diterpenoid metabolic process IEP HCCA
BP GO:0016102 diterpenoid biosynthetic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
MF GO:0016615 malate dehydrogenase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0019216 regulation of lipid metabolic process IEP HCCA
BP GO:0019217 regulation of fatty acid metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0031329 regulation of cellular catabolic process IEP HCCA
BP GO:0031998 regulation of fatty acid beta-oxidation IEP HCCA
BP GO:0042360 vitamin E metabolic process IEP HCCA
BP GO:0042362 fat-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042547 cell wall modification involved in multidimensional cell growth IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046320 regulation of fatty acid oxidation IEP HCCA
BP GO:0046686 response to cadmium ion IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
MF GO:0050342 tocopherol O-methyltransferase activity IEP HCCA
BP GO:0050994 regulation of lipid catabolic process IEP HCCA
BP GO:0055072 iron ion homeostasis IEP HCCA
BP GO:0055076 transition metal ion homeostasis IEP HCCA
BP GO:0062012 regulation of small molecule metabolic process IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072350 tricarboxylic acid metabolic process IEP HCCA
BP GO:0080093 regulation of photorespiration IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1902652 secondary alcohol metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005493 RraA/RraA-like 9 158
No external refs found!