AT5G56150 (UBC30)

Aliases : UBC30

Description : ubiquitin-conjugating enzyme 30

Gene families : OG0000200 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000200_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G56150

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00089p00061940	UBC10,...	Protein degradation.peptide...	0.02	OrthoFinder output from all 47 species
AT3G08700	UBC12	ubiquitin-conjugating enzyme 12	0.01	OrthoFinder output from all 47 species
Adi_g076665	UBC30	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.01	OrthoFinder output from all 47 species
Ala_g00519	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.01	OrthoFinder output from all 47 species
Ala_g30294	UBC9	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.01	OrthoFinder output from all 47 species
Als_g39862	ATUBC11, UBC11	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.01	OrthoFinder output from all 47 species
Als_g39881	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.01	OrthoFinder output from all 47 species
Als_g43928	ATUBC11, UBC11	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.01	OrthoFinder output from all 47 species
Als_g46782	ATUBC11, UBC11	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.01	OrthoFinder output from all 47 species
Aob_g08846	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene08036.t1	ATUBC11, UBC11,...	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene10121.t1	UBC10, Aspi01Gene10121	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene29033.t1	ATUBC8, UBC8,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g73826	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.06	OrthoFinder output from all 47 species
Cre16.g693700	UBC10	Protein degradation.peptide...	0.02	OrthoFinder output from all 47 species
Dde_g04183	ATUBC11, UBC11	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g27645	UBC9	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01019484001	UBC10	Protein degradation.peptide...	0.01	OrthoFinder output from all 47 species
Gb_27882	UBC10	conjugation E2 protein	0.02	OrthoFinder output from all 47 species
Len_g14393	ATUBC11, UBC11	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g05219	ATUBC11, UBC11	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g23404	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.01	OrthoFinder output from all 47 species
Lfl_g31742	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.01	OrthoFinder output from all 47 species
Lfl_g40150	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.03	OrthoFinder output from all 47 species
Mp5g21800.1	UBC10	conjugation E2 protein	0.03	OrthoFinder output from all 47 species
Mp7g03500.1	EMB144, CIN4, COP10, FUS9	conjugation E2 protein. E2 conjugating component COP10...	0.04	OrthoFinder output from all 47 species
Solyc06g007510.3.1	UBC10, Solyc06g007510	conjugation E2 protein	0.03	OrthoFinder output from all 47 species
Solyc08g008220.3.1	UBC10, Solyc08g008220	conjugation E2 protein	0.03	OrthoFinder output from all 47 species
Solyc08g081945.1.1	UBC10, Solyc08g081945	conjugation E2 protein	0.03	OrthoFinder output from all 47 species
Spa_g26850	UBC30	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g26711	UBC10	E2 MUB ubiquiTin-conjugaTing enzyme & original description: none	0.01	OrthoFinder output from all 47 species
Zm00001e009636_P001	ATUBC11, UBC11,...	conjugation E2 protein	0.01	OrthoFinder output from all 47 species
Zm00001e033719_P001	UBC10, Zm00001e033719	conjugation E2 protein	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001558	regulation of cell growth	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-templated DNA replication	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IDA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022603	regulation of anatomical structure morphogenesis	None	Extended
BP	GO:0022604	regulation of cell morphogenesis	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035966	response to topologically incorrect protein	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042023	DNA endoreduplication	RCA	Interproscan
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043248	proteasome assembly	RCA	Interproscan
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044786	cell cycle DNA replication	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051510	regulation of unidimensional cell growth	RCA	Interproscan
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051788	response to misfolded protein	RCA	Interproscan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006301	postreplication repair	IEP	HCCA
BP	GO:0006625	protein targeting to peroxisome	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
BP	GO:0010200	response to chitin	IEP	HCCA
BP	GO:0010243	response to organonitrogen compound	IEP	HCCA
BP	GO:0010351	lithium ion transport	IEP	HCCA
BP	GO:0015919	peroxisomal membrane transport	IEP	HCCA
BP	GO:0016558	protein import into peroxisome matrix	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0043574	peroxisomal transport	IEP	HCCA
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0065002	intracellular protein transmembrane transport	IEP	HCCA
BP	GO:0071806	protein transmembrane transport	IEP	HCCA
BP	GO:0072662	protein localization to peroxisome	IEP	HCCA
BP	GO:0072663	establishment of protein localization to peroxisome	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000608	UBQ-conjugat_E2	5	141

External Links

No external refs found!

AT5G56150 (UBC30)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation