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AT5G55400


Description : Actin binding Calponin homology (CH) domain-containing protein


Gene families : OG0001639 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001639_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G55400
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Ceric.13G006300.1 FIM1, ATFIM1,... fimbrin actin-crosslinking factor & original... 0.03 OrthoFinder output from all 47 species
Dcu_g05634 FIM5, FIM2 fimbrin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g37580.1 FIM5, FIM2,... fimbrin actin-crosslinking factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005773 vacuole IDA Interproscan
BP GO:0030048 actin filament-based movement RCA Interproscan
BP GO:0051645 Golgi localization RCA Interproscan
BP GO:0051646 mitochondrion localization RCA Interproscan
BP GO:0060151 peroxisome localization RCA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004683 calmodulin-dependent protein kinase activity IEP HCCA
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
BP GO:0051259 protein complex oligomerization IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR001715 CH_dom 270 370
IPR001715 CH_dom 130 239
IPR001715 CH_dom 400 498
IPR001715 CH_dom 517 618
No external refs found!