AT5G54750

Description : Transport protein particle (TRAPP) component

Gene families : OG0004388 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004388_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G54750
Cluster	HCCA: Cluster_103

Target	Alias	Description	ECC score	Gene Family Method
Aev_g05098	No alias	component *(BET3) of TRAPP-I/II/III complex-shared...	0.02	OrthoFinder output from all 47 species
Aob_g14585	No alias	component *(BET3) of TRAPP-I/II/III complex-shared...	0.03	OrthoFinder output from all 47 species
Aop_g09204	No alias	component *(BET3) of TRAPP-I/II/III complex-shared...	0.03	OrthoFinder output from all 47 species
Aop_g53744	No alias	component *(BET3) of TRAPP-I/II/III complex-shared...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000402.27	No alias	Vesicle trafficking.target membrane tethering.TRAPP...	0.02	OrthoFinder output from all 47 species
Cre03.g145607	No alias	Vesicle trafficking.target membrane tethering.TRAPP...	0.03	OrthoFinder output from all 47 species
GSVIVT01002004001	No alias	Vesicle trafficking.target membrane tethering.TRAPP...	0.03	OrthoFinder output from all 47 species
MA_10433808g0010	No alias	component BET3 of TRAPP-I/II/III complex-shared components	0.02	OrthoFinder output from all 47 species
Nbi_g02702	No alias	component *(BET3) of TRAPP-I/II/III complex-shared...	0.03	OrthoFinder output from all 47 species
Ore_g07881	No alias	component *(BET3) of TRAPP-I/II/III complex-shared...	0.03	OrthoFinder output from all 47 species
Pp3c6_29730V3.1	Pp3c6_29730	Transport protein particle (TRAPP) component	0.03	OrthoFinder output from all 47 species
Solyc10g006490.3.1	Solyc10g006490	component BET3 of TRAPP-I/II/III complex-shared components	0.05	OrthoFinder output from all 47 species
Zm00001e006626_P002	Zm00001e006626	component BET3 of TRAPP-I/II/III complex-shared components	0.04	OrthoFinder output from all 47 species
Zm00001e041872_P003	Zm00001e041872	component BET3 of TRAPP-I/II/III complex-shared components	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0030243	cellulose metabolic process	None	Extended
BP	GO:0030244	cellulose biosynthetic process	RCA	Interproscan
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048193	Golgi vesicle transport	RCA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0051274	beta-glucan biosynthetic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
CC	GO:0005795	Golgi stack	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006084	acetyl-CoA metabolic process	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006498	N-terminal protein lipidation	IEP	HCCA
BP	GO:0006499	N-terminal protein myristoylation	IEP	HCCA
BP	GO:0006637	acyl-CoA metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
MF	GO:0008320	protein transmembrane transporter activity	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
MF	GO:0008794	arsenate reductase (glutaredoxin) activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
MF	GO:0016004	phospholipase activator activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0018377	protein myristoylation	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	HCCA
CC	GO:0030134	COPII-coated ER to Golgi transport vesicle	IEP	HCCA
CC	GO:0030135	coated vesicle	IEP	HCCA
MF	GO:0030611	arsenate reductase activity	IEP	HCCA
MF	GO:0030613	oxidoreductase activity, acting on phosphorus or arsenic in donors	IEP	HCCA
MF	GO:0030614	oxidoreductase activity, acting on phosphorus or arsenic in donors, disulfide as acceptor	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031365	N-terminal protein amino acid modification	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0035383	thioester metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0060229	lipase activator activity	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
MF	GO:0140318	protein transporter activity	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007194	TRAPP_component	24	170

External Links

No external refs found!

AT5G54750

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation