AT5G54640 (RAT5, HTA1, ATHTA1)

Aliases : RAT5, HTA1, ATHTA1

Description : Histone superfamily protein

Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G54640
Cluster	HCCA: Cluster_103

Target	Alias	Description	ECC score	Gene Family Method
AT1G51060	HTA10	histone H2A 10	0.02	OrthoFinder output from all 47 species
AT5G59870	HTA6	histone H2A 6	0.01	OrthoFinder output from all 47 species
Aev_g39464	HTA6	histone *(H2A) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g37648	RAT5, HTA1, ATHTA1	histone *(H2A) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g44974	GAMMA-H2AX,...	histone *(H2A) & original description: none	0.01	OrthoFinder output from all 47 species
Azfi_s0027.g023695	GAMMA-H2AX,...	histone *(H2A) & original description: CDS=291-701	0.03	OrthoFinder output from all 47 species
Azfi_s0154.g053563	RAT5, HTA1, ATHTA1	histone *(H2A) & original description: CDS=1-702	0.02	OrthoFinder output from all 47 species
Cba_g08811	GAMMA-H2AX,...	histone *(H2A) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.01G127200.1	HTA6, Ceric.01G127200	histone *(H2A) & original description: pacid=50591993...	0.1	OrthoFinder output from all 47 species
Ceric.26G005600.1	GAMMA-H2AX,...	histone *(H2A) & original description: pacid=50599432...	0.01	OrthoFinder output from all 47 species
Ceric.26G005800.1	GAMMA-H2AX,...	histone *(H2A) & original description: pacid=50599346...	0.01	OrthoFinder output from all 47 species
Nbi_g40966	HTA2	histone *(H2A) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g06670	GAMMA-H2AX,...	histone *(H2A) & original description: none	0.01	OrthoFinder output from all 47 species
Smo166626	RAT5, HTA1, ATHTA1	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Smo73637	GAMMA-H2AX,...	Chromatin organisation.histones.H2A-type histone	0.01	OrthoFinder output from all 47 species
Smo76653	HTA2	Chromatin organisation.histones.H2A-type histone	0.01	OrthoFinder output from all 47 species
Spa_g03210	HTA6	histone *(H2A) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g03889	HTA7	histone *(H2A) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g29751	HTA6	histone *(H2A) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g32347	HTA6	histone *(H2A) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g32923	HTA6	histone *(H2A) & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g34289	HTA6	histone *(H2A) & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g48382	GAMMA-H2AX,...	histone *(H2A) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e011643_P001	HTA6, Zm00001e011643	histone (H2A)	0.02	OrthoFinder output from all 47 species
Zm00001e020483_P001	HTA6, Zm00001e020483	histone (H2A)	0.02	OrthoFinder output from all 47 species
Zm00001e033014_P001	HTA6, Zm00001e033014	histone (H2A)	0.02	OrthoFinder output from all 47 species
Zm00001e034815_P001	HTA12, Zm00001e034815	histone (H2A)	0.03	OrthoFinder output from all 47 species
Zm00001e039735_P001	GAMMA-H2AX,...	histone (H2A)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009292	horizontal gene transfer	None	Extended
BP	GO:0009294	DNA-mediated transformation	IMP	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009611	response to wounding	IEP	Interproscan
BP	GO:0009617	response to bacterium	IEP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR032454	Histone_H2A_C	93	126
IPR007125	Histone_H2A/H2B/H3	13	90

External Links

No external refs found!

AT5G54640 (RAT5, HTA1, ATHTA1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation