1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G53910

AT5G53910


Description : RING/U-box superfamily protein


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G53910

Target Alias Description ECC score Gene Family Method Actions
AT1G18760 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.01 OrthoFinder output from all 47 species
AT1G18780 No alias RING/U-box superfamily protein 0.07 OrthoFinder output from all 47 species
AT1G21960 No alias RING/U-box superfamily protein 0.08 OrthoFinder output from all 47 species
AT1G50350 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.03 OrthoFinder output from all 47 species
AT2G29840 No alias RING/U-box superfamily protein 0.06 OrthoFinder output from all 47 species
AT2G44330 No alias RING/U-box superfamily protein 0.07 OrthoFinder output from all 47 species
AT3G13228 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G60080 No alias RING/U-box superfamily protein 0.01 OrthoFinder output from all 47 species
Aev_g05960 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene15226.t1 Aspi01Gene15226 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g13373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008897001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Lfl_g24820 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g27734 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
MA_170709g0010 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
MA_289134g0010 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 OrthoFinder output from all 47 species
MA_413614g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_816375g0010 RHC1A Probable E3 ubiquitin-protein ligase RHC1A... 0.01 OrthoFinder output from all 47 species
Msp_g47303 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g23528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g24945 CIP8 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g29204 RHC1A RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pnu_g13986 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62548 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008140 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Zm00001e019544_P001 RHC1A, Zm00001e019544 Probable E3 ubiquitin-protein ligase RHC1A... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IDA Interproscan
CC GO:0005794 Golgi apparatus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005773 vacuole IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 171 213
No external refs found!