AT5G53430 (SET29, SDG29, ATX5)

Aliases : SET29, SDG29, ATX5

Description : SET domain group 29

Gene families : OG0000660 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000660_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G53430
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
Ala_g07772	SDG25, ATXR7	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Als_g32779	SDG25, ATXR7	class-III histone methyltransferase *(Trx) & original...	0.03	OrthoFinder output from all 47 species
Aob_g23333	SET29, SDG29, ATX5	class-III histone methyltransferase *(Trx) & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene13067.t1	SET29, SDG29,...	N-methyltransferase component *(ATX3/4/5) of COMPASS...	0.05	OrthoFinder output from all 47 species
Aspi01Gene46554.t1	ATX4, SDG16,...	class-III histone methyltransferase *(Trx) & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene46555.t1	SET29, SDG29,...	N-methyltransferase component *(ATX3/4/5) of COMPASS...	0.04	OrthoFinder output from all 47 species
Aspi01Gene66938.t1	ATX4, SDG16,...	class-III histone methyltransferase *(Trx) & original...	0.03	OrthoFinder output from all 47 species
Ceric.01G107400.1	ATX4, SDG16,...	class-III histone methyltransferase *(Trx) & original...	0.04	OrthoFinder output from all 47 species
Dcu_g07171	SDG25, ATXR7	class-III histone methyltransferase *(Trx) & original...	0.02	OrthoFinder output from all 47 species
Dcu_g09379	SET29, SDG29, ATX5	class-III histone methyltransferase *(Trx) & original...	0.05	OrthoFinder output from all 47 species
Gb_04139	SDG25, ATXR7	class III/Trithorax histone methyltransferase component...	0.04	OrthoFinder output from all 47 species
LOC_Os01g11952.1	SET29, SDG29,...	class III/Trithorax histone methyltransferase component...	0.03	OrthoFinder output from all 47 species
LOC_Os01g46700.1	ATX4, SDG16,...	class III/Trithorax histone methyltransferase component...	0.03	OrthoFinder output from all 47 species
Mp4g21720.1	ATX4, SDG16	class III/Trithorax histone methyltransferase component...	0.03	OrthoFinder output from all 47 species
Ore_g03423	SDG25, ATXR7	class-III histone methyltransferase *(Trx) & original...	0.02	OrthoFinder output from all 47 species
Sam_g14555	No alias	class-III histone methyltransferase *(Trx) & original...	0.04	OrthoFinder output from all 47 species
Solyc01g095890.4.1	ATX4, SDG16,...	class III/Trithorax histone methyltransferase component...	0.02	OrthoFinder output from all 47 species
Zm00001e039307_P005	SDG25, ATXR7,...	class III/Trithorax histone methyltransferase component...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009292	horizontal gene transfer	None	Extended
BP	GO:0009294	DNA-mediated transformation	IMP	Interproscan
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009751	response to salicylic acid	IEP	HCCA
BP	GO:0009756	carbohydrate mediated signaling	IEP	HCCA
BP	GO:0009825	multidimensional cell growth	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010182	sugar mediated signaling pathway	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019915	lipid storage	IEP	HCCA
CC	GO:0031307	obsolete integral component of mitochondrial outer membrane	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0048532	anatomical structure arrangement	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000313	PWWP_dom	222	318
IPR001214	SET_dom	912	1017
IPR019787	Znf_PHD-finger	415	468

External Links

No external refs found!

AT5G53430 (SET29, SDG29, ATX5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation