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  5. AT5G51980

AT5G51980


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG0001347 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001347_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G51980

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene00603.t1 ZFWD1, Aspi01Gene00603 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene00609.t1 ZFWD1, Aspi01Gene00609 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene28908.t1 ZFWD1, Aspi01Gene28908 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene67987.t1 ZFWD1, Aspi01Gene67987 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene68004.t1 ZFWD1, Aspi01Gene68004 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene72516.t1 Aspi01Gene72516 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene72519.t1 Aspi01Gene72519 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Cba_g72088 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Cba_g75051 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre12.g510150 No alias Zinc finger CCCH domain-containing protein 48... 0.01 OrthoFinder output from all 47 species
Ehy_g12883 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44047 ZFWD1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
MF GO:0004629 phospholipase C activity IEP HCCA
MF GO:0004708 MAP kinase kinase activity IEP HCCA
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006623 protein targeting to vacuole IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009269 response to desiccation IEP HCCA
BP GO:0009408 response to heat IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0009414 response to water deprivation IEP HCCA
BP GO:0009415 response to water IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009631 cold acclimation IEP HCCA
BP GO:0009642 response to light intensity IEP HCCA
BP GO:0009643 photosynthetic acclimation IEP HCCA
BP GO:0009734 auxin-activated signaling pathway IEP HCCA
BP GO:0009737 response to abscisic acid IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009908 flower development IEP HCCA
BP GO:0009956 radial pattern formation IEP HCCA
BP GO:0010029 regulation of seed germination IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010080 regulation of floral meristem growth IEP HCCA
BP GO:0010286 heat acclimation IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010492 maintenance of shoot apical meristem identity IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0035265 organ growth IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046982 protein heterodimerization activity IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048608 reproductive structure development IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
BP GO:0060771 phyllotactic patterning IEP HCCA
BP GO:0060772 leaf phyllotactic patterning IEP HCCA
BP GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072665 protein localization to vacuole IEP HCCA
BP GO:0072666 establishment of protein localization to vacuole IEP HCCA
BP GO:0080050 regulation of seed development IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
BP GO:0097305 response to alcohol IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000034 regulation of seed maturation IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2000243 positive regulation of reproductive process IEP HCCA
BP GO:2000693 positive regulation of seed maturation IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 305 339
IPR001680 WD40_repeat 143 179
IPR001680 WD40_repeat 265 300
No external refs found!