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  5. AT5G50750

AT5G50750 (RGP4)


Aliases : RGP4

Description : reversibly glycosylated polypeptide 4


Gene families : OG0001238 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001238_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G50750
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Aev_g27791 RGP3, RGP UDP-L-arabinose mutase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g31603 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12497.t1 ATRGP1, RGP1,... UDP-L-arabinose mutase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g01470 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01036557001 RGP3, RGP Carbohydrate metabolism.nucleotide sugar... 0.05 OrthoFinder output from all 47 species
Gb_21665 ATRGP1, RGP1 UDP-L-arabinose mutase 0.04 OrthoFinder output from all 47 species
Gb_31191 RGP3, RGP UDP-L-arabinose mutase 0.04 OrthoFinder output from all 47 species
MA_162652g0010 RGP3, RGP UDP-L-arabinose mutase 0.02 OrthoFinder output from all 47 species
Mp2g10790.1 RGP3, RGP UDP-L-arabinose mutase 0.03 OrthoFinder output from all 47 species
Mp2g10800.1 ATRGP1, RGP1 UDP-L-arabinose mutase 0.02 OrthoFinder output from all 47 species
Ore_g28090 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0041.g012500 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: CDS=168-1190 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013218 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: CDS=186-1241 0.03 OrthoFinder output from all 47 species
Solyc03g019750.3.1 RGP3, RGP, Solyc03g019750 UDP-L-arabinose mutase 0.05 OrthoFinder output from all 47 species
Solyc05g012070.3.1 ATRGP1, RGP1,... UDP-L-arabinose mutase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005794 Golgi apparatus IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004126 cytidine deaminase activity IEP HCCA
MF GO:0004567 beta-mannosidase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
BP GO:0006213 pyrimidine nucleoside metabolic process IEP HCCA
BP GO:0006216 cytidine catabolic process IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009119 ribonucleoside metabolic process IEP HCCA
BP GO:0009164 nucleoside catabolic process IEP HCCA
BP GO:0009698 phenylpropanoid metabolic process IEP HCCA
BP GO:0009806 lignan metabolic process IEP HCCA
BP GO:0009807 lignan biosynthetic process IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009972 cytidine deamination IEP HCCA
MF GO:0010340 carboxyl-O-methyltransferase activity IEP HCCA
MF GO:0010341 gibberellin carboxyl-O-methyltransferase activity IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0016207 4-coumarate-CoA ligase activity IEP HCCA
MF GO:0016405 CoA-ligase activity IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0016878 acid-thiol ligase activity IEP HCCA
MF GO:0016985 mannan endo-1,4-beta-mannosidase activity IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
CC GO:0031012 extracellular matrix IEP HCCA
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP HCCA
BP GO:0042454 ribonucleoside catabolic process IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0046087 cytidine metabolic process IEP HCCA
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP HCCA
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP HCCA
BP GO:0046135 pyrimidine nucleoside catabolic process IEP HCCA
CC GO:0071944 cell periphery IEP HCCA
BP GO:0072529 pyrimidine-containing compound catabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
BP GO:1901658 glycosyl compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR037595 RGP_fam 15 348
No external refs found!