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  5. AT5G50340

AT5G50340


Description : ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases


Gene families : OG0003800 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003800_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G50340
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00184430 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Adi_g052199 No alias RecA-activity effector *(RadA) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06273 No alias RecA-activity effector *(RadA) & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g19014 No alias RecA-activity effector *(RadA) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g47628 No alias RecA-activity effector *(RadA) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IBA Interproscan
CC GO:0009295 nucleoid IBA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000418 RNA polymerase IV complex IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003720 telomerase activity IEP HCCA
MF GO:0003721 telomerase RNA reverse transcriptase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006278 RNA-templated DNA biosynthetic process IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007000 nucleolus organization IEP HCCA
BP GO:0007004 telomere maintenance via telomerase IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0009896 positive regulation of catabolic process IEP HCCA
BP GO:0010495 siRNA-mediated long-distance post-transcriptional gene silencing IEP HCCA
BP GO:0010833 telomere maintenance via telomere lengthening IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0017148 negative regulation of translation IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0031329 regulation of cellular catabolic process IEP HCCA
BP GO:0031331 positive regulation of cellular catabolic process IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034249 negative regulation of amide metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043487 regulation of RNA stability IEP HCCA
BP GO:0043488 regulation of mRNA stability IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0050000 chromosome localization IEP HCCA
BP GO:0050779 RNA destabilization IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0051248 negative regulation of protein metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
BP GO:0061013 regulation of mRNA catabolic process IEP HCCA
BP GO:0061014 positive regulation of mRNA catabolic process IEP HCCA
BP GO:0061157 mRNA destabilization IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0090625 siRNA-mediated gene silencing by mRNA destabilization IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:0140766 siRNA-mediated gene silencing IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
BP GO:1903313 positive regulation of mRNA metabolic process IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!