1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G49980

AT5G49980 (AFB5)


Aliases : AFB5

Description : auxin F-box protein 5


Gene families : OG0000211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000211_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G49980

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00126140 AFB2,... Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
AMTR_s00029p00217840 COI1,... Phytohormones.jasmonic acid.perception and signal... 0.03 OrthoFinder output from all 47 species
Adi_g001615 COI1 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
Adi_g014124 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015381 COI1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g023634 AFB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057088 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.02 OrthoFinder output from all 47 species
Adi_g107960 TIR1 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
Aev_g04138 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
Als_g18642 TIR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28117 AFB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24321 TIR1 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
Aop_g10981 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
Aop_g13912 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene04141.t1 AFB2, Aspi01Gene04141 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene06540.t1 AFB2, Aspi01Gene06540 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.04 OrthoFinder output from all 47 species
Aspi01Gene17403.t1 COI1, Aspi01Gene17403 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
Cba_g37430 COI1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.02G101000.1 AFB2, Ceric.02G101000 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.05 OrthoFinder output from all 47 species
Ceric.05G036600.1 COI1, Ceric.05G036600 component *(COI) of jasmonic acid receptor complex &... 0.08 OrthoFinder output from all 47 species
Ceric.16G043700.1 TIR1, Ceric.16G043700 not classified & original description: pacid=50590125... 0.04 OrthoFinder output from all 47 species
Dcu_g13244 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
Dde_g02846 COI1 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g02869 COI1 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g03881 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.02 OrthoFinder output from all 47 species
Ehy_g04939 COI1 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01009126001 AFB5 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
GSVIVT01016368001 COI1 Phytohormones.jasmonic acid.perception and signal... 0.03 OrthoFinder output from all 47 species
Gb_07237 COI1 Coronatine-insensitive protein homolog 1b OS=Oryza... 0.04 OrthoFinder output from all 47 species
Lfl_g18913 COI1 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
MA_10436355g0010 COI1 Coronatine-insensitive protein 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_108477g0010 COI1 component COI of jasmonic acid receptor complex 0.04 OrthoFinder output from all 47 species
MA_15842g0010 TIR1 component TIR1/AFB of auxin receptor complex. component... 0.04 OrthoFinder output from all 47 species
MA_47869g0020 No alias F-box protein FBX14 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
MA_646265g0010 COI1 Coronatine-insensitive protein homolog 1a OS=Oryza... 0.03 OrthoFinder output from all 47 species
MA_78902g0010 AFB5 component TIR1/AFB of auxin receptor complex 0.05 OrthoFinder output from all 47 species
MA_92309g0010 TIR1 component TIR1/AFB of auxin receptor complex. component... 0.02 OrthoFinder output from all 47 species
Mp2g26590.1 COI1 component COI of jasmonic acid receptor complex 0.02 OrthoFinder output from all 47 species
Nbi_g04248 COI1 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
Pir_g01338 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.02 OrthoFinder output from all 47 species
Pnu_g18805 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
Smo168175 AFB2 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Spa_g18002 COI1 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e008324_P001 AFB2, Zm00001e008324 component TIR1/AFB of auxin receptor complex. component... 0.03 OrthoFinder output from all 47 species
Zm00001e015908_P001 Zm00001e015908 component TIR1/AFB of auxin receptor complex. component... 0.03 OrthoFinder output from all 47 species
Zm00001e027505_P001 TIR1, Zm00001e027505 component TIR1/AFB of auxin receptor complex. component... 0.02 OrthoFinder output from all 47 species
Zm00001e040776_P001 AFB2, Zm00001e040776 component TIR1/AFB of auxin receptor complex. component... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0002237 response to molecule of bacterial origin RCA Interproscan
MF GO:0004842 ubiquitin-protein transferase activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0007165 signal transduction RCA Interproscan
BP GO:0010103 stomatal complex morphogenesis RCA Interproscan
BP GO:0048443 stamen development RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000822 inositol hexakisphosphate binding IEP HCCA
BP GO:0001708 cell fate specification IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
CC GO:0009504 cell plate IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009734 auxin-activated signaling pathway IEP HCCA
BP GO:0009740 gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009741 response to brassinosteroid IEP HCCA
BP GO:0009755 hormone-mediated signaling pathway IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009863 salicylic acid mediated signaling pathway IEP HCCA
BP GO:0009867 jasmonic acid mediated signaling pathway IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0009937 regulation of gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009938 negative regulation of gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0009968 negative regulation of signal transduction IEP HCCA
MF GO:0010011 auxin binding IEP HCCA
BP GO:0010025 wax biosynthetic process IEP HCCA
BP GO:0010029 regulation of seed germination IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010152 pollen maturation IEP HCCA
BP GO:0010158 abaxial cell fate specification IEP HCCA
BP GO:0010166 wax metabolic process IEP HCCA
BP GO:0010187 negative regulation of seed germination IEP HCCA
BP GO:0010218 response to far red light IEP HCCA
BP GO:0010311 lateral root formation IEP HCCA
BP GO:0010325 raffinose family oligosaccharide biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010476 gibberellin mediated signaling pathway IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010648 negative regulation of cell communication IEP HCCA
BP GO:0014070 response to organic cyclic compound IEP HCCA
BP GO:0016036 cellular response to phosphate starvation IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
CC GO:0019005 SCF ubiquitin ligase complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0023057 negative regulation of signaling IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030048 actin filament-based movement IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032880 regulation of protein localization IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
MF GO:0042562 hormone binding IEP HCCA
BP GO:0042744 hydrogen peroxide catabolic process IEP HCCA
BP GO:0042752 regulation of circadian rhythm IEP HCCA
MF GO:0043178 alcohol binding IEP HCCA
BP GO:0048444 floral organ morphogenesis IEP HCCA
BP GO:0048581 negative regulation of post-embryonic development IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0048585 negative regulation of response to stimulus IEP HCCA
BP GO:0051093 negative regulation of developmental process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051241 negative regulation of multicellular organismal process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060147 regulation of post-transcriptional gene silencing IEP HCCA
BP GO:0060148 positive regulation of post-transcriptional gene silencing IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
BP GO:0080050 regulation of seed development IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090697 post-embryonic plant organ morphogenesis IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1900140 regulation of seedling development IEP HCCA
BP GO:1901568 fatty acid derivative metabolic process IEP HCCA
BP GO:1901570 fatty acid derivative biosynthetic process IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000033 regulation of seed dormancy process IEP HCCA
BP GO:2000034 regulation of seed maturation IEP HCCA
BP GO:2000377 regulation of reactive oxygen species metabolic process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!