AT5G48760


Description : Ribosomal protein L13 family protein


Gene families : OG0001291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001291_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G48760

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00144180 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
AMTR_s00089p00040540 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.31 OrthoFinder output from all 47 species
Adi_g108658 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Adi_g124393 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g124594 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aev_g06438 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g00711 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Als_g12384 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Als_g26514 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g62167 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aob_g06957 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g06902 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.21 OrthoFinder output from all 47 species
Aop_g09537 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g15634 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g22675 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Aspi01Gene32952.t1 Aspi01Gene32952 component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0075.g037721 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Azfi_s0272.g061284 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Azfi_s0594.g078801 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Cba_g09451 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.05G058300.1 Ceric.05G058300 component *(uL13) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Ceric.20G024700.1 Ceric.20G024700 component *(uL13) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000792.29 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.37 OrthoFinder output from all 47 species
Cre12.g532550 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 OrthoFinder output from all 47 species
Dac_g00316 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.2 OrthoFinder output from all 47 species
Dcu_g06037 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.21 OrthoFinder output from all 47 species
Dcu_g34535 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.2 OrthoFinder output from all 47 species
Dde_g02606 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ehy_g02053 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
GSVIVT01021080001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder output from all 47 species
GSVIVT01028661001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
LOC_Os03g54890.1 LOC_Os03g54890 component RPL13a of LSU proteome component 0.35 OrthoFinder output from all 47 species
LOC_Os07g01870.1 LOC_Os07g01870 component RPL13a of LSU proteome component 0.02 OrthoFinder output from all 47 species
Len_g10030 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Len_g17905 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Len_g42876 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g21734 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
MA_186340g0010 No alias component RPL13a of LSU proteome component 0.36 OrthoFinder output from all 47 species
Mp2g08690.1 No alias component RPL13a of LSU proteome component 0.34 OrthoFinder output from all 47 species
Mp4g15790.1 No alias component RPL13a of LSU proteome component 0.31 OrthoFinder output from all 47 species
Msp_g06781 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.19 OrthoFinder output from all 47 species
Msp_g27149 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Nbi_g04609 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Nbi_g12434 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ore_g10936 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ore_g10937 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ore_g10938 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pir_g01822 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c11_17280V3.1 Pp3c11_17280 Ribosomal protein L13 family protein 0.18 OrthoFinder output from all 47 species
Pp3c19_10330V3.1 Pp3c19_10330 Ribosomal protein L13 family protein 0.23 OrthoFinder output from all 47 species
Pp3c1_15830V3.1 Pp3c1_15830 Ribosomal protein L13 family protein 0.18 OrthoFinder output from all 47 species
Pp3c2_20550V3.1 Pp3c2_20550 Ribosomal protein L13 family protein 0.19 OrthoFinder output from all 47 species
Ppi_g18014 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g25630 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Sam_g05746 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g06363 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g07579 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Sam_g14121 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g14122 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Sam_g28928 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g31286 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Sam_g43171 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo166650 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 OrthoFinder output from all 47 species
Solyc05g053670.3.1 Solyc05g053670 component RPL13a of LSU proteome component 0.42 OrthoFinder output from all 47 species
Solyc09g091740.4.1 Solyc09g091740 component RPL13a of LSU proteome component 0.46 OrthoFinder output from all 47 species
Spa_g10532 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.32 OrthoFinder output from all 47 species
Spa_g15627 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Spa_g15628 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.23 OrthoFinder output from all 47 species
Spa_g22049 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Spa_g34128 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g44762 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Tin_g00453 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Tin_g34122 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e005719_P002 Zm00001e005719 component RPL13a of LSU proteome component 0.36 OrthoFinder output from all 47 species
Zm00001e012017_P002 Zm00001e012017 component RPL13a of LSU proteome component 0.3 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0006412 translation ISS Interproscan
BP GO:0009664 plant-type cell wall organization RCA Interproscan
CC GO:0015934 large ribosomal subunit ISS Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
BP GO:0042545 cell wall modification RCA Interproscan
Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 12 118
No external refs found!