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  5. Gb_40303

Gb_40303


Description : Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana (sp|q9liq7|pp252_arath : 467.0)


Gene families : OG_01_0000306 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000306_tree ,
OG_02_0004751 (LandPlants) Phylogenetic Tree(s): OG_02_0004751_tree ,
OG_03_0003052 (SeedPlants) Phylogenetic Tree(s): OG_03_0003052_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_40303
Cluster HCCA: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Cpa|evm.model.tig00001623.10 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.01 Archaeplastida
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.03 Archaeplastida
LOC_Os02g51480.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.03 Archaeplastida
LOC_Os03g19650.3 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 Archaeplastida
Pp3c8_13830V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Smo119487 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.04 Archaeplastida
GSVIVT01003422001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 LandPlants
GSVIVT01024139001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
MA_103698g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.04 LandPlants
MA_285386g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 LandPlants
Solyc03g051780.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
Solyc09g005990.4.1 No alias Pentatricopeptide repeat-containing protein At2g37320... 0.02 LandPlants
Solyc11g010220.2.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 LandPlants
Zm00001e024311_P001 No alias Pentatricopeptide repeat-containing protein At1g09410,... 0.02 LandPlants
GSVIVT01003422001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 SeedPlants
GSVIVT01024139001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
MA_103698g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.04 SeedPlants
MA_285386g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 SeedPlants
Solyc03g051780.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
Solyc09g005990.4.1 No alias Pentatricopeptide repeat-containing protein At2g37320... 0.02 SeedPlants
Solyc10g054730.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 SeedPlants
Solyc11g010220.2.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 SeedPlants
Zm00001e024311_P001 No alias Pentatricopeptide repeat-containing protein At1g09410,... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 157 204
IPR002885 Pentatricopeptide_repeat 257 305
IPR002885 Pentatricopeptide_repeat 360 407
IPR002885 Pentatricopeptide_repeat 501 529
IPR002885 Pentatricopeptide_repeat 334 355
IPR032867 DYW_dom 533 588
No external refs found!