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AT5G48460


Description : Actin binding Calponin homology (CH) domain-containing protein


Gene families : OG0001639 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001639_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G48460

Target Alias Description ECC score Gene Family Method Actions
Als_g11441 No alias fimbrin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003818001 No alias Fimbrin-2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01037750001 FIM5, FIM2 Cytoskeleton.microfilament network.actin... 0.04 OrthoFinder output from all 47 species
Sam_g51111 No alias fimbrin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0030048 actin filament-based movement RCA Interproscan
BP GO:0051645 Golgi localization RCA Interproscan
BP GO:0051646 mitochondrion localization RCA Interproscan
BP GO:0060151 peroxisome localization RCA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006857 oligopeptide transport IEP HCCA
BP GO:0007623 circadian rhythm IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015112 nitrate transmembrane transporter activity IEP HCCA
BP GO:0015833 peptide transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP HCCA
BP GO:0019758 glycosinolate biosynthetic process IEP HCCA
BP GO:0019761 glucosinolate biosynthetic process IEP HCCA
CC GO:0030427 site of polarized growth IEP HCCA
CC GO:0035838 growing cell tip IEP HCCA
BP GO:0042886 amide transport IEP HCCA
BP GO:0048511 rhythmic process IEP HCCA
BP GO:0051049 regulation of transport IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
CC GO:0051286 cell tip IEP HCCA
CC GO:0060187 cell pole IEP HCCA
MF GO:0080054 low-affinity nitrate transmembrane transporter activity IEP HCCA
CC GO:0090404 pollen tube tip IEP HCCA
BP GO:2000012 regulation of auxin polar transport IEP HCCA
InterPro domains Description Start Stop
IPR001715 CH_dom 270 371
IPR001715 CH_dom 143 238
IPR001715 CH_dom 518 620
IPR001715 CH_dom 396 499
No external refs found!