AT5G47430

Description : DWNN domain, a CCHC-type zinc finger

Gene families : OG0001168 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001168_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G47430
Cluster	HCCA: Cluster_98

Target	Alias	Description	ECC score	Gene Family Method
Adi_g013405	No alias	component *(MPE1) of Cleavage and Polyadenylation...	0.03	OrthoFinder output from all 47 species
Als_g20650	No alias	component *(MPE1) of Cleavage and Polyadenylation...	0.03	OrthoFinder output from all 47 species
Ceric.39G057500.1	Ceric.39G057500	component *(MPE1) of Cleavage and Polyadenylation...	0.08	OrthoFinder output from all 47 species
Dcu_g06496	No alias	component *(MPE1) of Cleavage and Polyadenylation...	0.03	OrthoFinder output from all 47 species
Dcu_g12334	No alias	component *(MPE1) of Cleavage and Polyadenylation...	0.03	OrthoFinder output from all 47 species
GSVIVT01006271001	No alias	RNA processing.RNA 3-end polyadenylation.Cleavage and...	0.04	OrthoFinder output from all 47 species
Gb_27645	No alias	component MPE1 of Cleavage and Polyadenylation...	0.05	OrthoFinder output from all 47 species
Mp2g17650.1	No alias	component MPE1 of Cleavage and Polyadenylation...	0.03	OrthoFinder output from all 47 species
Msp_g25720	No alias	component *(MPE1) of Cleavage and Polyadenylation...	0.03	OrthoFinder output from all 47 species
Pnu_g07536	No alias	component *(MPE1) of Cleavage and Polyadenylation...	0.03	OrthoFinder output from all 47 species
Solyc08g061890.4.1	Solyc08g061890	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Spa_g10359	No alias	component *(MPE1) of Cleavage and Polyadenylation...	0.06	OrthoFinder output from all 47 species
Tin_g09334	No alias	component *(MPE1) of Cleavage and Polyadenylation...	0.02	OrthoFinder output from all 47 species
Zm00001e004737_P002	Zm00001e004737	component MPE1 of Cleavage and Polyadenylation...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006470	protein dephosphorylation	RCA	Interproscan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	None	Extended
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016311	dephosphorylation	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031047	RNA-mediated gene silencing	None	Extended
BP	GO:0031048	RNA-mediated heterochromatin formation	RCA	Interproscan
BP	GO:0031507	heterochromatin formation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000785	chromatin	IEP	HCCA
CC	GO:0000932	P-body	IEP	HCCA
MF	GO:0005483	soluble NSF attachment protein activity	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0009553	embryo sac development	IEP	HCCA
BP	GO:0010603	regulation of cytoplasmic mRNA processing body assembly	IEP	HCCA
BP	GO:0010606	positive regulation of cytoplasmic mRNA processing body assembly	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
BP	GO:0017148	negative regulation of translation	IEP	HCCA
MF	GO:0030674	protein-macromolecule adaptor activity	IEP	HCCA
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	IEP	HCCA
BP	GO:0033962	P-body assembly	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034249	negative regulation of amide metabolic process	IEP	HCCA
CC	GO:0035770	ribonucleoprotein granule	IEP	HCCA
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
BP	GO:0044087	regulation of cellular component biogenesis	IEP	HCCA
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0048316	seed development	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051248	negative regulation of protein metabolic process	IEP	HCCA
MF	GO:0060090	molecular adaptor activity	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
BP	GO:0110154	RNA decapping	IEP	HCCA
BP	GO:0110156	methylguanosine-cap decapping	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:1902115	regulation of organelle assembly	IEP	HCCA
BP	GO:1902117	positive regulation of organelle assembly	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR014891	DWNN_domain	3	76
IPR025829	Zn_knuckle_CX2CX3GHX4C	205	225

External Links

No external refs found!

AT5G47430

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation