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  5. AT5G46100

AT5G46100


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0001250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001250_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G46100
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00015p00258950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00104100 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g61870,... 0.05 OrthoFinder output from all 47 species
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.03 OrthoFinder output from all 47 species
AMTR_s00032p00197250 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g55890,... 0.04 OrthoFinder output from all 47 species
AMTR_s00111p00140430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01400,... 0.04 OrthoFinder output from all 47 species
AMTR_s00221p00020810 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.04 OrthoFinder output from all 47 species
AT3G14580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g060042 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01008016001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
GSVIVT01011280001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 OrthoFinder output from all 47 species
GSVIVT01017298001 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.05 OrthoFinder output from all 47 species
GSVIVT01018992001 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.04 OrthoFinder output from all 47 species
Gb_00757 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.04 OrthoFinder output from all 47 species
Gb_07822 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.04 OrthoFinder output from all 47 species
Gb_12262 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.04 OrthoFinder output from all 47 species
Gb_14900 EMB1025 Pentatricopeptide repeat-containing protein At4g20090... 0.04 OrthoFinder output from all 47 species
Gb_23196 No alias Pentatricopeptide repeat-containing protein At1g05600... 0.06 OrthoFinder output from all 47 species
Gb_23263 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.07 OrthoFinder output from all 47 species
Gb_37573 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.04 OrthoFinder output from all 47 species
Gb_38400 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.04 OrthoFinder output from all 47 species
LOC_Os01g63400.1 LOC_Os01g63400 Pentatricopeptide repeat-containing protein At3g09060... 0.03 OrthoFinder output from all 47 species
LOC_Os02g42210.1 LOC_Os02g42210 Pentatricopeptide repeat-containing protein At4g36680,... 0.04 OrthoFinder output from all 47 species
LOC_Os05g04160.1 LOC_Os05g04160 Pentatricopeptide repeat-containing protein At3g48810... 0.03 OrthoFinder output from all 47 species
LOC_Os06g30420.1 EMB1025, LOC_Os06g30420 Pentatricopeptide repeat-containing protein At4g20090... 0.04 OrthoFinder output from all 47 species
LOC_Os08g39050.1 LOC_Os08g39050 Pentatricopeptide repeat-containing protein At1g80150,... 0.05 OrthoFinder output from all 47 species
MA_125741g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.03 OrthoFinder output from all 47 species
MA_131324g0010 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.04 OrthoFinder output from all 47 species
MA_137206g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 OrthoFinder output from all 47 species
MA_17644g0010 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.04 OrthoFinder output from all 47 species
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.03 OrthoFinder output from all 47 species
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.05 OrthoFinder output from all 47 species
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc02g077650.2.1 Solyc02g077650 Pentatricopeptide repeat-containing protein At5g46100... 0.09 OrthoFinder output from all 47 species
Solyc02g081860.3.1 EMB1025, Solyc02g081860 Pentatricopeptide repeat-containing protein At4g20090... 0.03 OrthoFinder output from all 47 species
Solyc04g076070.1.1 Solyc04g076070 Pentatricopeptide repeat-containing protein At5g18475... 0.03 OrthoFinder output from all 47 species
Solyc05g012250.3.1 Solyc05g012250 Pentatricopeptide repeat-containing protein At1g80150,... 0.04 OrthoFinder output from all 47 species
Solyc07g045380.3.1 Solyc07g045380 Pentatricopeptide repeat-containing protein At1g05600... 0.05 OrthoFinder output from all 47 species
Solyc09g014210.3.1 Solyc09g014210 Pentatricopeptide repeat-containing protein At3g09060... 0.07 OrthoFinder output from all 47 species
Solyc12g014330.1.1 Solyc12g014330 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Zm00001e027557_P001 Zm00001e027557 Pentatricopeptide repeat-containing protein At3g48810... 0.05 OrthoFinder output from all 47 species
Zm00001e028732_P001 Zm00001e028732 Pentatricopeptide repeat-containing protein At3g09060... 0.03 OrthoFinder output from all 47 species
Zm00001e034625_P001 Zm00001e034625 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005819 spindle IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
BP GO:0008285 negative regulation of cell population proliferation IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
BP GO:0010015 root morphogenesis IEP HCCA
BP GO:0010101 post-embryonic root morphogenesis IEP HCCA
BP GO:0010102 lateral root morphogenesis IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 413 439
IPR002885 Pentatricopeptide_repeat 335 362
IPR002885 Pentatricopeptide_repeat 291 323
IPR002885 Pentatricopeptide_repeat 186 219
IPR002885 Pentatricopeptide_repeat 225 274
IPR002885 Pentatricopeptide_repeat 120 168
No external refs found!