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  5. AT5G42860

AT5G42860


Description : unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45688.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).


Gene families : OG0001442 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001442_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G42860

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00054230 evm_27.TU.AmTr_v1... Cell wall.cellulose.synthesis.cellulose synthase complex... 0.03 OrthoFinder output from all 47 species
AT1G45688 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.05 OrthoFinder output from all 47 species
AT3G24600 No alias Late embryogenesis abundant protein, group 2 0.03 OrthoFinder output from all 47 species
Adi_g043372 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g12307 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0117.g046456 No alias not classified & original description: CDS=162-1187 0.03 OrthoFinder output from all 47 species
Ceric.01G076700.1 Ceric.01G076700 not classified & original description: pacid=50591443... 0.03 OrthoFinder output from all 47 species
Dcu_g25242 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01017064001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01032090001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_09110 No alias microtubule-interacting component CC of cellulose... 0.03 OrthoFinder output from all 47 species
Len_g54658 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g03471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02766 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007480_P002 Zm00001e007480 microtubule-interacting component CC of cellulose... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0005345 purine nucleobase transmembrane transporter activity IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006857 oligopeptide transport IEP HCCA
BP GO:0006863 purine nucleobase transport IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
MF GO:0015205 nucleobase transmembrane transporter activity IEP HCCA
BP GO:0015833 peptide transport IEP HCCA
BP GO:0015851 nucleobase transport IEP HCCA
BP GO:0015853 adenine transport IEP HCCA
BP GO:0015854 guanine transport IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0042886 amide transport IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA

No InterPro domains available for this sequence

No external refs found!