AT5G42400 (SDG25, ATXR7)

Aliases : SDG25, ATXR7

Description : SET domain protein 25

Gene families : OG0000660 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000660_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G42400
Cluster	HCCA: Cluster_68

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00081590	SDG25, ATXR7,...	Chromatin organisation.histone modifications.histone...	0.01	OrthoFinder output from all 47 species
Aev_g20401	ATX4, SDG16	class-III histone methyltransferase *(Trx) & original...	0.02	OrthoFinder output from all 47 species
Ala_g07772	SDG25, ATXR7	EC_2.1 transferase transferring one-carbon group &...	0.06	OrthoFinder output from all 47 species
Ala_g11407	ATX3, SDG14	class-III histone methyltransferase *(Trx) & original...	0.06	OrthoFinder output from all 47 species
Ala_g11532	ATX4, SDG16	class-III histone methyltransferase *(Trx) & original...	0.08	OrthoFinder output from all 47 species
Als_g16658	SET29, SDG29, ATX5	class-III histone methyltransferase *(Trx) & original...	0.06	OrthoFinder output from all 47 species
Als_g29274	SDG25, ATXR7	class-III histone methyltransferase *(Trx) & original...	0.02	OrthoFinder output from all 47 species
Als_g30869	ATX3, SDG14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g56618	ATX4, SDG16	class-III histone methyltransferase *(Trx) & original...	0.05	OrthoFinder output from all 47 species
Aob_g23333	SET29, SDG29, ATX5	class-III histone methyltransferase *(Trx) & original...	0.04	OrthoFinder output from all 47 species
Aob_g29752	SDG25, ATXR7	class-III histone methyltransferase *(Trx) & original...	0.04	OrthoFinder output from all 47 species
Aop_g06246	SET29, SDG29, ATX5	class-III histone methyltransferase *(Trx) & original...	0.03	OrthoFinder output from all 47 species
Aop_g19017	ATX3, SDG14	class-III histone methyltransferase *(Trx) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene46553.t2	ATX4, SDG16,...	class-III histone methyltransferase *(Trx) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene46555.t1	SET29, SDG29,...	N-methyltransferase component *(ATX3/4/5) of COMPASS...	0.04	OrthoFinder output from all 47 species
Aspi01Gene66942.t1	SET29, SDG29,...	N-methyltransferase component *(ATX3/4/5) of COMPASS...	0.03	OrthoFinder output from all 47 species
Azfi_s0092.g043087	SET29, SDG29, ATX5	class-III histone methyltransferase *(Trx) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0271.g061215	ATX4, SDG16	class-III histone methyltransferase *(Trx) & original...	0.02	OrthoFinder output from all 47 species
Ceric.01G107400.1	ATX4, SDG16,...	class-III histone methyltransferase *(Trx) & original...	0.11	OrthoFinder output from all 47 species
Ceric.32G012900.1	SDG25, ATXR7,...	EC_2.1 transferase transferring one-carbon group &...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000488.8	SDG25, ATXR7	Chromatin organisation.histone modifications.histone...	0.01	OrthoFinder output from all 47 species
Cre09.g395584	No alias	No description available	0.08	OrthoFinder output from all 47 species
Cre11.g475950	SDG25, ATXR7	Histone-lysine N-methyltransferase ATXR7 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Cre12.g515050	ATX3, SDG14	Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Dac_g39988	SET29, SDG29, ATX5	class-III histone methyltransferase *(Trx) & original...	0.03	OrthoFinder output from all 47 species
Dcu_g07171	SDG25, ATXR7	class-III histone methyltransferase *(Trx) & original...	0.08	OrthoFinder output from all 47 species
Dcu_g08323	SET29, SDG29, ATX5	class-III histone methyltransferase *(Trx) & original...	0.06	OrthoFinder output from all 47 species
Dcu_g09379	SET29, SDG29, ATX5	class-III histone methyltransferase *(Trx) & original...	0.05	OrthoFinder output from all 47 species
Dde_g08195	SDG25, ATXR7	class-III histone methyltransferase *(Trx) & original...	0.02	OrthoFinder output from all 47 species
Ehy_g07137	SET29, SDG29, ATX5	class-III histone methyltransferase *(Trx) & original...	0.05	OrthoFinder output from all 47 species
Gb_04139	SDG25, ATXR7	class III/Trithorax histone methyltransferase component...	0.06	OrthoFinder output from all 47 species
LOC_Os01g46700.1	ATX4, SDG16,...	class III/Trithorax histone methyltransferase component...	0.06	OrthoFinder output from all 47 species
LOC_Os12g41900.1	SDG25, ATXR7,...	class III/Trithorax histone methyltransferase component...	0.04	OrthoFinder output from all 47 species
Len_g14720	ATX4, SDG16	class-III histone methyltransferase *(Trx) & original...	0.06	OrthoFinder output from all 47 species
Lfl_g09511	SDG25, ATXR7	class-III histone methyltransferase *(Trx) & original...	0.06	OrthoFinder output from all 47 species
Lfl_g10001	SDG25, ATXR7	class-III histone methyltransferase *(Trx) & original...	0.04	OrthoFinder output from all 47 species
Lfl_g17819	ATX4, SDG16	class-III histone methyltransferase *(Trx) & original...	0.06	OrthoFinder output from all 47 species
MA_14080g0020	ATX3, SDG14	Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_18041g0010	SDG25, ATXR7	class III/Trithorax histone methyltransferase component...	0.06	OrthoFinder output from all 47 species
Mp1g17790.1	SDG25, ATXR7	class III/Trithorax histone methyltransferase component...	0.1	OrthoFinder output from all 47 species
Ore_g05016	SET29, SDG29, ATX5	class-III histone methyltransferase *(Trx) & original...	0.05	OrthoFinder output from all 47 species
Ore_g13903	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g13633	ATX3, SDG14	class-III histone methyltransferase *(Trx) & original...	0.02	OrthoFinder output from all 47 species
Ppi_g09508	ATX3, SDG14	class-III histone methyltransferase *(Trx) & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001119	ATX3, SDG14	class-III histone methyltransferase *(Trx) & original...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0199.g025555	SDG25, ATXR7	class-III histone methyltransferase *(Trx) & original...	0.05	OrthoFinder output from all 47 species
Sam_g14051	No alias	class-III histone methyltransferase *(Trx) & original...	0.07	OrthoFinder output from all 47 species
Sam_g14555	No alias	class-III histone methyltransferase *(Trx) & original...	0.06	OrthoFinder output from all 47 species
Smo164635	ATX3, SDG14	Chromatin organisation.histone modifications.histone...	0.04	OrthoFinder output from all 47 species
Solyc03g083410.3.1	ATX4, SDG16,...	class III/Trithorax histone methyltransferase component...	0.04	OrthoFinder output from all 47 species
Spa_g47178	SDG25, ATXR7	class-III histone methyltransferase *(Trx) & original...	0.03	OrthoFinder output from all 47 species
Spa_g55030	ATX3, SDG14	class-III histone methyltransferase *(Trx) & original...	0.04	OrthoFinder output from all 47 species
Tin_g13148	ATX4, SDG16	class-III histone methyltransferase *(Trx) & original...	0.03	OrthoFinder output from all 47 species
Tin_g13372	SET29, SDG29, ATX5	class-III histone methyltransferase *(Trx) & original...	0.05	OrthoFinder output from all 47 species
Zm00001e039307_P005	SDG25, ATXR7,...	class III/Trithorax histone methyltransferase component...	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009909	regulation of flower development	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IMP	Interproscan
BP	GO:0010452	histone H3-K36 methylation	IDA	Interproscan
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051568	histone H3-K4 methylation	IGI	Interproscan
BP	GO:0051568	histone H3-K4 methylation	ISS	Interproscan
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
BP	GO:0000731	DNA synthesis involved in DNA repair	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004156	dihydropteroate synthase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
MF	GO:0004525	ribonuclease III activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006301	postreplication repair	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0009911	positive regulation of flower development	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010099	regulation of photomorphogenesis	IEP	HCCA
BP	GO:0010100	negative regulation of photomorphogenesis	IEP	HCCA
BP	GO:0010212	response to ionizing radiation	IEP	HCCA
BP	GO:0010216	maintenance of DNA methylation	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
CC	GO:0016035	zeta DNA polymerase complex	IEP	HCCA
BP	GO:0016569	obsolete covalent chromatin modification	IEP	HCCA
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
BP	GO:0019321	pentose metabolic process	IEP	HCCA
BP	GO:0019985	translesion synthesis	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
CC	GO:0042575	DNA polymerase complex	IEP	HCCA
BP	GO:0042732	D-xylose metabolic process	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
BP	GO:0048582	positive regulation of post-embryonic development	IEP	HCCA
BP	GO:0051094	positive regulation of developmental process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0071897	DNA biosynthetic process	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA
BP	GO:2000030	regulation of response to red or far red light	IEP	HCCA
BP	GO:2000243	positive regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001214	SET_dom	1278	1382

External Links

No external refs found!

AT5G42400 (SDG25, ATXR7)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation