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  5. AT5G40340

AT5G40340


Description : Tudor/PWWP/MBT superfamily protein


Gene families : OG0000954 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000954_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G40340
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00210830 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
Adi_g060541 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06788 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g64510 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G017200.1 Ceric.03G017200 not classified & original description: pacid=50571554... 0.03 OrthoFinder output from all 47 species
GSVIVT01016344001 No alias Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01032455001 No alias Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_40891 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os05g38810.1 LOC_Os05g38810 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os11g19810.1 LOC_Os11g19810 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g20479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10197194g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Nbi_g14266 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16152 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43036 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g06451 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g22851 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g24316 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g31146 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g41391 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g40244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e027258_P002 Zm00001e027258 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e031849_P002 Zm00001e031849 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001091 RNA polymerase II general transcription initiation factor binding IEP HCCA
MF GO:0001093 TFIIB-class transcription factor binding IEP HCCA
MF GO:0001098 basal transcription machinery binding IEP HCCA
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0005199 structural constituent of cell wall IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
CC GO:0005652 nuclear lamina IEP HCCA
CC GO:0005770 late endosome IEP HCCA
CC GO:0005798 Golgi-associated vesicle IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006625 protein targeting to peroxisome IEP HCCA
BP GO:0006892 post-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006896 Golgi to vacuole transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
BP GO:0009556 microsporogenesis IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0010440 stomatal lineage progression IEP HCCA
BP GO:0015919 peroxisomal membrane transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016558 protein import into peroxisome matrix IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0030133 transport vesicle IEP HCCA
CC GO:0030135 coated vesicle IEP HCCA
CC GO:0030136 clathrin-coated vesicle IEP HCCA
CC GO:0030140 trans-Golgi network transport vesicle IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
BP GO:0033037 polysaccharide localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034293 sexual sporulation IEP HCCA
CC GO:0034399 nuclear periphery IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0043574 peroxisomal transport IEP HCCA
BP GO:0043934 sporulation IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0045324 late endosome to vacuole transport IEP HCCA
BP GO:0048236 plant-type sporogenesis IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
BP GO:0052386 cell wall thickening IEP HCCA
BP GO:0052543 callose deposition in cell wall IEP HCCA
BP GO:0052545 callose localization IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
MF GO:0070063 RNA polymerase binding IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072662 protein localization to peroxisome IEP HCCA
BP GO:0072663 establishment of protein localization to peroxisome IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000313 PWWP_dom 126 211
No external refs found!