AT5G39980

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG0008153 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008153_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G39980

Target	Alias	Description	ECC score	Gene Family Method	Actions
Solyc02g087560.1.1	Solyc02g087560	Pentatricopeptide repeat-containing protein At5g39980,...	0.03	OrthoFinder output from all 47 species
Zm00001e019387_P001	Zm00001e019387	Pentatricopeptide repeat-containing protein At5g39980,...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	399	442
IPR002885	Pentatricopeptide_repeat	258	303
IPR002885	Pentatricopeptide_repeat	153	201
IPR002885	Pentatricopeptide_repeat	577	602
IPR002885	Pentatricopeptide_repeat	538	566
IPR002885	Pentatricopeptide_repeat	471	497
IPR002885	Pentatricopeptide_repeat	226	256
IPR002885	Pentatricopeptide_repeat	328	377

External Links

No external refs found!