AT5G37780 (TCH1, CAM1, ACAM-1)

Aliases : TCH1, CAM1, ACAM-1

Description : calmodulin 1

Gene families : OG0000295 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000295_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G37780

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00095p00113890	CAM3, acam-3,...	Calmodulin OS=Medicago sativa	0.05	OrthoFinder output from all 47 species
Adi_g002632	ACAM-6, CAM6	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g021511	ACAM-6, CAM6	calcium sensor *(CML) & original description: none	0.06	OrthoFinder output from all 47 species
Adi_g045838	CAM3, acam-3	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g051294	ACAM-6, CAM6	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g05659	ACAM-6, CAM6	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g07660	ACAM-6, CAM6	calcium sensor *(CML) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g36845	CAM3, acam-3	calcium sensor *(CML) & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g10087	CAM3, acam-3	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0080.g038455	No alias	not classified & original description: CDS=276-527	0.03	OrthoFinder output from all 47 species
Cba_g08304	ACAM-6, CAM6	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.20G013100.1	CAM3, acam-3,...	calcium sensor *(CML) & original description:...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000692.65	ACAM-6, CAM6	Calmodulin-2 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021435.44	ACAM-6, CAM6	Calmodulin OS=Mougeotia scalaris	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021435.47	ACAM-6, CAM6	Calmodulin OS=Mougeotia scalaris	0.03	OrthoFinder output from all 47 species
Cre03.g150300	ACAM-6, CAM6	Calmodulin-3 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
Cre03.g178150	ACAM-6, CAM6	Calmodulin OS=Chlamydomonas reinhardtii	0.07	OrthoFinder output from all 47 species
LOC_Os01g17190.1	ACAM-6, CAM6,...	Calmodulin-related protein OS=Petunia hybrida...	0.04	OrthoFinder output from all 47 species
LOC_Os05g41210.1	ACAM-6, CAM6,...	Calmodulin-related protein OS=Petunia hybrida...	0.05	OrthoFinder output from all 47 species
Lfl_g28621	CAM3, acam-3	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
MA_66144g0010	CAM3, acam-3	Calmodulin-related protein OS=Petunia hybrida...	0.03	OrthoFinder output from all 47 species
Msp_g04344	ACAM-6, CAM6	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10911	CAM3, acam-3	calcium sensor *(CML) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g14970	CAM3, acam-3	calcium sensor *(CML) & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g63264	CAM3, acam-3	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g36671	CAM3, acam-3	calcium sensor *(CML) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g098050.3.1	CAM3, acam-3,...	Calmodulin OS=Solanum lycopersicum (sp\|p27161\|calm_sollc : 234.0)	0.03	OrthoFinder output from all 47 species
Spa_g02829	TCH1, CAM1, ACAM-1	calcium sensor *(CML) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g26354	CAM3, acam-3	calcium sensor *(CML) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	ISS	Interproscan
MF	GO:0005509	calcium ion binding	NAS	Interproscan
BP	GO:0005513	detection of calcium ion	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009593	detection of chemical stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009612	response to mechanical stimulus	IEP	Interproscan
BP	GO:0009612	response to mechanical stimulus	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0019722	calcium-mediated signaling	RCA	Interproscan
BP	GO:0019932	second-messenger-mediated signaling	None	Extended
BP	GO:0030029	actin filament-based process	None	Extended
BP	GO:0030048	actin filament-based movement	RCA	Interproscan
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051592	response to calcium ion	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0051640	organelle localization	None	Extended
BP	GO:0051645	Golgi localization	RCA	Interproscan
BP	GO:0051646	mitochondrion localization	RCA	Interproscan
BP	GO:0060151	peroxisome localization	RCA	Interproscan
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
CC	GO:0000785	chromatin	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004402	histone acetyltransferase activity	IEP	HCCA
MF	GO:0004871	obsolete signal transducer activity	IEP	HCCA
MF	GO:0005527	macrolide binding	IEP	HCCA
MF	GO:0005528	FK506 binding	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005770	late endosome	IEP	HCCA
CC	GO:0005771	multivesicular body	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005795	Golgi stack	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006084	acetyl-CoA metabolic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0006637	acyl-CoA metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006665	sphingolipid metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008320	protein transmembrane transporter activity	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
CC	GO:0009504	cell plate	IEP	HCCA
CC	GO:0009543	chloroplast thylakoid lumen	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
CC	GO:0016272	prefoldin complex	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
BP	GO:0016572	obsolete histone phosphorylation	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	HCCA
BP	GO:0030148	sphingolipid biosynthetic process	IEP	HCCA
MF	GO:0030527	structural constituent of chromatin	IEP	HCCA
BP	GO:0030865	cortical cytoskeleton organization	IEP	HCCA
BP	GO:0031122	cytoplasmic microtubule organization	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031977	thylakoid lumen	IEP	HCCA
CC	GO:0031978	plastid thylakoid lumen	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	HCCA
BP	GO:0035383	thioester metabolic process	IEP	HCCA
BP	GO:0043622	cortical microtubule organization	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0046519	sphingoid metabolic process	IEP	HCCA
BP	GO:0046520	sphingoid biosynthetic process	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140318	protein transporter activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002048	EF_hand_dom	83	146
IPR002048	EF_hand_dom	12	73

External Links

No external refs found!

AT5G37780 (TCH1, CAM1, ACAM-1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation