AT5G35620 (LSP, LSP1,...)

Aliases : LSP, LSP1, EIF(ISO)4E, EIF4E2, eIFiso4E

Description : Eukaryotic initiation factor 4E protein

Gene families : OG0001969 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001969_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G35620

Target	Alias	Description	ECC score	Gene Family Method
Adi_g007830	EIF4E, CUM1,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g092585	LSP, LSP1,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g14128	EIF4E, CUM1,...	component *(eIF4E) of eIF4F mRNA unwinding complex &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene71417.t1	EIF4E, CUM1,...	component *(eIF-iso4E) of eIF-iso4F unwinding complex &...	0.01	OrthoFinder output from all 47 species
Azfi_s0368.g067043	EIF4E, CUM1,...	not classified & original description: CDS=117-755	0.02	OrthoFinder output from all 47 species
Dac_g33664	EIF4E, CUM1,...	component *(eIF4E) of eIF4F mRNA unwinding complex &...	0.01	OrthoFinder output from all 47 species
Dcu_g00736	EIF4E, CUM1,...	component *(eIF-iso4E) of eIF-iso4F unwinding complex &...	0.02	OrthoFinder output from all 47 species
Gb_08649	EIF4E, CUM1,...	component eIF4E of eIF4F mRNA unwinding complex....	0.02	OrthoFinder output from all 47 species
Spa_g52532	EIF4E, CUM1,...	component *(eIF4E) of eIF4F mRNA unwinding complex &...	0.01	OrthoFinder output from all 47 species
Tin_g00239	EIF4E, CUM1,...	component *(eIF-iso4E) of eIF-iso4F unwinding complex &...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000339	RNA cap binding	None	Extended
MF	GO:0000340	RNA 7-methylguanosine cap binding	TAS	Interproscan
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
BP	GO:0002832	negative regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0003743	translation initiation factor activity	ISS	Interproscan
MF	GO:0003743	translation initiation factor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISS	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005737	cytoplasm	TAS	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006413	translational initiation	ISS	Interproscan
BP	GO:0006413	translational initiation	TAS	Interproscan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032102	negative regulation of response to external stimulus	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0050687	negative regulation of defense response to virus	IMP	Interproscan
BP	GO:0050688	regulation of defense response to virus	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001040	TIF_eIF_4E	27	183

External Links

No external refs found!

AT5G35620 (LSP, LSP1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation