AT5G33290 (XGD1)

Aliases : XGD1

Description : xylogalacturonan deficient 1

Gene families : OG0000367 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000367_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G33290

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00264420	evm_27.TU.AmTr_v1...	Probable glycosyltransferase At5g11130 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Aev_g12482	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g01539	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g10335	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene28837.t2	Aspi01Gene28837	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0005.g008902	No alias	xylogalacturonan xylosyltransferase & original...	0.02	OrthoFinder output from all 47 species
Ehy_g11513	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01015330001	No alias	Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01035630001	No alias	Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Lfl_g10778	No alias	xylogalacturonan xylosyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g27520	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g50510	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005768	endosome	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
CC	GO:0005802	trans-Golgi network	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008194	UDP-glycosyltransferase activity	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0010393	galacturonan metabolic process	None	Extended
BP	GO:0010398	xylogalacturonan metabolic process	IMP	Interproscan
CC	GO:0016020	membrane	ISS	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	glycosyltransferase activity	None	Extended
MF	GO:0016763	pentosyltransferase activity	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
MF	GO:0035252	UDP-xylosyltransferase activity	IDA	Interproscan
MF	GO:0042285	xylosyltransferase activity	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045488	pectin metabolic process	None	Extended
BP	GO:0045489	pectin biosynthetic process	IMP	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098791	Golgi apparatus subcompartment	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004263	Exostosin	162	451

External Links

No external refs found!

AT5G33290 (XGD1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation