AT5G28460

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG0020065 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0020065_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G28460
Cluster	HCCA: Cluster_120

Target	Alias	Description	ECC score	Gene Family Method	Actions
GSVIVT01026966001	No alias	Pentatricopeptide repeat-containing protein At3g61520,...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	366	397
IPR002885	Pentatricopeptide_repeat	325	356
IPR002885	Pentatricopeptide_repeat	579	628
IPR002885	Pentatricopeptide_repeat	650	697
IPR002885	Pentatricopeptide_repeat	475	523
IPR002885	Pentatricopeptide_repeat	404	453
IPR002885	Pentatricopeptide_repeat	548	576
IPR002885	Pentatricopeptide_repeat	189	214

External Links

No external refs found!