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  5. AT5G27110

AT5G27110


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G27110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00222920 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00010p00220510 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00228270 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00084p00089150 OTP86,... Pentatricopeptide repeat-containing protein At3g63370,... 0.02 OrthoFinder output from all 47 species
AT1G31010 OSB4 organellar single-stranded DNA binding protein 4 0.03 OrthoFinder output from all 47 species
AT3G05240 MEF19 mitochondrial editing factor 19 0.03 OrthoFinder output from all 47 species
Adi_g005797 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035622 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036802 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g081792 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099248 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099350 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g15170 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g27648 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g46412 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05108 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11424 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17512 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27794 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31182 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33506 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05088 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05916 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06074 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g17957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18476 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18796 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19058 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g27639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59996 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08782 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09162 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0125.g048584 CRR22 not classified & original description: CDS=1-1611 0.02 OrthoFinder output from all 47 species
Azfi_s0127.g048709 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2400 0.02 OrthoFinder output from all 47 species
Azfi_s0235.g059459 OTP86 not classified & original description: CDS=1-2445 0.03 OrthoFinder output from all 47 species
Azfi_s0264.g060909 EMB2758 not classified & original description: CDS=1-2373 0.02 OrthoFinder output from all 47 species
Azfi_s0270.g061187 No alias not classified & original description: CDS=1-3441 0.02 OrthoFinder output from all 47 species
Cba_g05331 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06583 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07412 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07780 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g45006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g45942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G068200.1 OTP86, Ceric.04G068200 not classified & original description: pacid=50632337... 0.03 OrthoFinder output from all 47 species
Ceric.04G109500.1 Ceric.04G109500 not classified & original description: pacid=50632099... 0.03 OrthoFinder output from all 47 species
Ceric.06G074600.1 Ceric.06G074600 not classified & original description: pacid=50619733... 0.02 OrthoFinder output from all 47 species
Ceric.09G066700.1 Ceric.09G066700 not classified & original description: pacid=50588343... 0.03 OrthoFinder output from all 47 species
Ceric.21G030500.1 Ceric.21G030500 not classified & original description: pacid=50603713... 0.03 OrthoFinder output from all 47 species
Ceric.21G051400.1 VAC1, ECB2,... not classified & original description: pacid=50603510... 0.03 OrthoFinder output from all 47 species
Ceric.27G070400.1 CRR22, Ceric.27G070400 not classified & original description: pacid=50605716... 0.03 OrthoFinder output from all 47 species
Ceric.28G001700.1 Ceric.28G001700 not classified & original description: pacid=50570577... 0.02 OrthoFinder output from all 47 species
Ceric.28G027300.1 CRR22, Ceric.28G027300 not classified & original description: pacid=50569783... 0.02 OrthoFinder output from all 47 species
Ceric.39G022100.1 Ceric.39G022100 not classified & original description: pacid=50582510... 0.02 OrthoFinder output from all 47 species
Dac_g04916 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g23801 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06376 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08264 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08804 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16948 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g33764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g41011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010031001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
LOC_Os01g08120.1 OTP81, LOC_Os01g08120 RNA editing factor (OTP81) 0.02 OrthoFinder output from all 47 species
LOC_Os03g04390.1 LOC_Os03g04390 Pentatricopeptide repeat-containing protein At4g35130,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g64370.1 LOC_Os03g64370 Pentatricopeptide repeat-containing protein At5g52850,... 0.03 OrthoFinder output from all 47 species
LOC_Os04g39410.1 OTP86, LOC_Os04g39410 RNA editing factor (OTP86) 0.02 OrthoFinder output from all 47 species
LOC_Os04g41120.1 LOC_Os04g41120 Pentatricopeptide repeat-containing protein At4g38010... 0.03 OrthoFinder output from all 47 species
LOC_Os05g24150.1 LOC_Os05g24150 Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species
LOC_Os05g45850.1 LOC_Os05g45850 Pentatricopeptide repeat-containing protein At4g33170... 0.02 OrthoFinder output from all 47 species
LOC_Os06g27790.1 REME1, LOC_Os06g27790 Pentatricopeptide repeat-containing protein At2g03880,... 0.03 OrthoFinder output from all 47 species
LOC_Os08g40020.1 MEF19, LOC_Os08g40020 RNA editing factor (MEF19) 0.02 OrthoFinder output from all 47 species
Len_g17578 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g27339 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g34131 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g38488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g58985 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04255 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04959 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05740 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06194 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07771 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07787 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10855 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g28174 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32916 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_16917g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_96662g0010 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Pnu_g03353 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15494 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16080 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29479 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30421 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24307 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g006920.4.1 Solyc01g006920 Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
Solyc01g100800.2.1 Solyc01g100800 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc01g110010.3.1 Solyc01g110010 Pentatricopeptide repeat-containing protein At1g74600,... 0.04 OrthoFinder output from all 47 species
Solyc02g011680.4.1 Solyc02g011680 Pentatricopeptide repeat-containing protein At5g27110... 0.02 OrthoFinder output from all 47 species
Solyc02g093380.1.1 Solyc02g093380 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Solyc03g051780.3.1 Solyc03g051780 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc03g063690.1.1 MEF1, Solyc03g063690 RNA editing factor (MEF1) 0.04 OrthoFinder output from all 47 species
Solyc03g097850.1.1 Solyc03g097850 Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species
Solyc03g119120.3.1 Solyc03g119120 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Solyc05g009400.3.1 Solyc05g009400 Pentatricopeptide repeat-containing protein At3g29230... 0.04 OrthoFinder output from all 47 species
Solyc06g053850.4.1 Solyc06g053850 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Solyc06g069700.4.1 Solyc06g069700 Pentatricopeptide repeat-containing protein At5g61400... 0.03 OrthoFinder output from all 47 species
Solyc06g082880.2.1 Solyc06g082880 RNA editing factor (MEF13) 0.05 OrthoFinder output from all 47 species
Solyc06g084580.1.1 Solyc06g084580 Pentatricopeptide repeat-containing protein At4g20770... 0.03 OrthoFinder output from all 47 species
Solyc07g042760.1.1 Solyc07g042760 Pentatricopeptide repeat-containing protein At4g31070,... 0.03 OrthoFinder output from all 47 species
Solyc08g023640.1.1 Solyc08g023640 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Solyc09g010070.1.1 EMB2758, Solyc09g010070 Pentatricopeptide repeat-containing protein At4g33990... 0.02 OrthoFinder output from all 47 species
Solyc09g065710.1.1 OTP86, Solyc09g065710 RNA editing factor (OTP86) 0.03 OrthoFinder output from all 47 species
Solyc10g008590.1.1 Solyc10g008590 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Solyc11g008940.1.1 CRR2, Solyc11g008940 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
Solyc11g008970.1.1 Solyc11g008970 Pentatricopeptide repeat-containing protein At4g39952,... 0.04 OrthoFinder output from all 47 species
Solyc11g067210.1.1 Solyc11g067210 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Solyc12g099620.1.1 Solyc12g099620 Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species
Spa_g08806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09284 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09940 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23504 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13206 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29153 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000301_P001 Zm00001e000301 Pentatricopeptide repeat-containing protein At4g35130,... 0.03 OrthoFinder output from all 47 species
Zm00001e007597_P001 Zm00001e007597 Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
Zm00001e012607_P002 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e013211_P001 OTP82, Zm00001e013211 Pentatricopeptide repeat-containing protein At5g48910... 0.04 OrthoFinder output from all 47 species
Zm00001e013713_P001 Zm00001e013713 Pentatricopeptide repeat-containing protein At4g20770... 0.03 OrthoFinder output from all 47 species
Zm00001e015695_P001 Zm00001e015695 Pentatricopeptide repeat-containing protein At4g16835,... 0.05 OrthoFinder output from all 47 species
Zm00001e020567_P001 Zm00001e020567 RNA editing factor (MEF7) 0.02 OrthoFinder output from all 47 species
Zm00001e024311_P001 Zm00001e024311 Pentatricopeptide repeat-containing protein At1g09410,... 0.03 OrthoFinder output from all 47 species
Zm00001e031351_P001 EMB2261, Zm00001e031351 RNA editing factor (ECD1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000374 Group III intron splicing IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
BP GO:0006278 RNA-templated DNA biosynthetic process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0090351 seedling development IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 273 320
IPR002885 Pentatricopeptide_repeat 172 219
IPR002885 Pentatricopeptide_repeat 474 521
IPR002885 Pentatricopeptide_repeat 377 420
IPR002885 Pentatricopeptide_repeat 549 571
IPR002885 Pentatricopeptide_repeat 73 100
IPR002885 Pentatricopeptide_repeat 247 272
IPR002885 Pentatricopeptide_repeat 615 645
No external refs found!