AT5G27030 (TPR3)

Aliases : TPR3

Description : TOPLESS-related 3

Gene families : OG0000427 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000427_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G27030
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
Als_g26654	TPR1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g34066	TPL, WSIP1	transcriptional co-repressor *(TPL/TPR) & original...	0.02	OrthoFinder output from all 47 species
Dcu_g19733	TPL, WSIP1	transcriptional co-repressor *(TPL/TPR) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g07917	TPL, WSIP1	transcriptional co-repressor *(TPL/TPR) & original...	0.03	OrthoFinder output from all 47 species
Gb_37153	TPL, WSIP1	transcriptional repressor (TPL). transcriptional...	0.02	OrthoFinder output from all 47 species
Lfl_g40403	TPL, WSIP1	transcriptional co-repressor *(TPL/TPR) & original...	0.02	OrthoFinder output from all 47 species
Mp7g17410.1	TPR1	transcriptional repressor (TPL). transcriptional...	0.03	OrthoFinder output from all 47 species
Sam_g16347	No alias	transcriptional co-repressor *(TPL/TPR) & original...	0.04	OrthoFinder output from all 47 species
Spa_g45611	TPR1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e017248_P004	TPR2, Zm00001e017248	transcriptional repressor (TPL). transcriptional...	0.02	OrthoFinder output from all 47 species
Zm00001e040187_P001	TPR1, Zm00001e040187	transcriptional repressor (TPL). transcriptional...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0010014	meristem initiation	None	Extended
BP	GO:0010072	primary shoot apical meristem specification	IGI	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0090421	embryonic meristem initiation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
CC	GO:0000228	nuclear chromosome	IEP	HCCA
CC	GO:0000502	proteasome complex	IEP	HCCA
BP	GO:0000710	meiotic mismatch repair	IEP	HCCA
BP	GO:0000723	telomere maintenance	IEP	HCCA
CC	GO:0000793	condensed chromosome	IEP	HCCA
CC	GO:0000794	condensed nuclear chromosome	IEP	HCCA
CC	GO:0000795	synaptonemal complex	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003684	damaged DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006312	mitotic recombination	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
CC	GO:0008540	proteasome regulatory particle, base subcomplex	IEP	HCCA
BP	GO:0009617	response to bacterium	IEP	HCCA
BP	GO:0009626	plant-type hypersensitive response	IEP	HCCA
BP	GO:0009690	cytokinin metabolic process	IEP	HCCA
BP	GO:0009691	cytokinin biosynthetic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010212	response to ionizing radiation	IEP	HCCA
BP	GO:0010332	response to gamma radiation	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0012501	programmed cell death	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
MF	GO:0030371	translation repressor activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0032204	regulation of telomere maintenance	IEP	HCCA
CC	GO:0032300	mismatch repair complex	IEP	HCCA
BP	GO:0032504	multicellular organism reproduction	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0034050	programmed cell death induced by symbiont	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	HCCA
BP	GO:0042742	defense response to bacterium	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044403	biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
BP	GO:0045143	homologous chromosome segregation	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051026	chiasma assembly	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051702	biological process involved in interaction with symbiont	IEP	HCCA
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0098813	nuclear chromosome segregation	IEP	HCCA
CC	GO:0099086	synaptonemal structure	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	448	482
IPR001680	WD40_repeat	899	932

External Links

No external refs found!

AT5G27030 (TPR3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation