AT5G26780 (SHM2)

Aliases : SHM2

Description : serine hydroxymethyltransferase 2

Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G26780

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00262120	SHM4,...	Amino acid metabolism.biosynthesis.serine...	0.04	OrthoFinder output from all 47 species
Aev_g10440	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Als_g10591	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Cba_g07101	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Ceric.37G044200.1	STM, SHM1,...	EC_2.1 transferase transferring one-carbon group &...	0.05	OrthoFinder output from all 47 species
Cre06.g293950	SHM4	Amino acid metabolism.biosynthesis.serine...	0.02	OrthoFinder output from all 47 species
GSVIVT01009226001	STM, SHM1, SHMT1	Photosynthesis.photorespiration.serine hydroxymethyltransferase	0.03	OrthoFinder output from all 47 species
LOC_Os11g26860.1	SHM4, LOC_Os11g26860	Serine hydroxymethyltransferase 4 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_11357g0010	SHM4	serine hydroxymethyltransferase. serine hydroxymethyltransferase	0.04	OrthoFinder output from all 47 species
Nbi_g04285	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Pir_g01613	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.04	OrthoFinder output from all 47 species
Sam_g07760	No alias	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Solyc04g076790.3.1	STM, SHM1,...	serine hydroxymethyltransferase	0.05	OrthoFinder output from all 47 species
Solyc05g053810.3.1	SHM4, Solyc05g053810	serine hydroxymethyltransferase. serine hydroxymethyltransferase	0.03	OrthoFinder output from all 47 species
Zm00001e021483_P001	SHM4, Zm00001e021483	serine hydroxymethyltransferase. serine hydroxymethyltransferase	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004372	glycine hydroxymethyltransferase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
CC	GO:0005747	mitochondrial respiratory chain complex I	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006544	glycine metabolic process	ISS	Interproscan
BP	GO:0006563	L-serine metabolic process	ISS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IDA	Interproscan
BP	GO:0009069	serine family amino acid metabolic process	None	Extended
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009744	response to sucrose	RCA	Interproscan
BP	GO:0009746	response to hexose	None	Extended
BP	GO:0009749	response to glucose	RCA	Interproscan
BP	GO:0009750	response to fructose	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0030964	NADH dehydrogenase complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034284	response to monosaccharide	None	Extended
BP	GO:0034285	response to disaccharide	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
CC	GO:0045271	respiratory chain complex I	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0050897	cobalt ion binding	IDA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098798	mitochondrial protein-containing complex	None	Extended
CC	GO:0098800	inner mitochondrial membrane protein complex	None	Extended
CC	GO:0098803	respiratory chain complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1902495	transmembrane transporter complex	None	Extended
CC	GO:1990204	oxidoreductase complex	None	Extended
CC	GO:1990351	transporter complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004375	glycine dehydrogenase (decarboxylating) activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005960	glycine cleavage complex	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006498	N-terminal protein lipidation	IEP	HCCA
BP	GO:0006499	N-terminal protein myristoylation	IEP	HCCA
BP	GO:0006546	glycine catabolic process	IEP	HCCA
BP	GO:0009063	amino acid catabolic process	IEP	HCCA
BP	GO:0009071	serine family amino acid catabolic process	IEP	HCCA
BP	GO:0009853	photorespiration	IEP	HCCA
BP	GO:0016054	organic acid catabolic process	IEP	HCCA
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	HCCA
MF	GO:0016642	oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	IEP	HCCA
BP	GO:0018377	protein myristoylation	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0031365	N-terminal protein amino acid modification	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0046395	carboxylic acid catabolic process	IEP	HCCA
BP	GO:1901606	alpha-amino acid catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR039429	SHMT-like_dom	55	452

External Links

No external refs found!

AT5G26780 (SHM2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation