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  5. AT5G25780

AT5G25780 (EIF3B-2, ATEIF3B-2, EIF3B)


Aliases : EIF3B-2, ATEIF3B-2, EIF3B

Description : eukaryotic translation initiation factor 3B-2


Gene families : OG0004558 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004558_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G25780
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Aev_g01392 EIF3B-2, ATEIF3B-2, EIF3B component *(eIF3b) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Azfi_s0045.g029833 EIF3B-2, ATEIF3B-2, EIF3B component *(eIF3b) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Cre03.g190100 EIF3B-2, ATEIF3B-2, EIF3B Protein biosynthesis.translation... 0.03 OrthoFinder output from all 47 species
Pir_g01028 EIF3B-2, ATEIF3B-2, EIF3B component *(eIF3b) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Sam_g10595 No alias component *(eIF3b) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Tin_g05601 EIF3B-2, ATEIF3B-2, EIF3B component *(eIF3b) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
MF GO:0003743 translation initiation factor activity ISS Interproscan
MF GO:0003743 translation initiation factor activity TAS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006935 chemotaxis IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0009875 pollen-pistil interaction IEP HCCA
BP GO:0010183 pollen tube guidance IEP HCCA
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP HCCA
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP HCCA
BP GO:0019478 D-amino acid catabolic process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0040011 locomotion IEP HCCA
BP GO:0042330 taxis IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
BP GO:0046416 D-amino acid metabolic process IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0050918 positive chemotaxis IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR013979 TIF_beta_prop-like 403 603
IPR000504 RRM_dom 80 134
No external refs found!