1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G24870

AT5G24870


Description : RING/U-box superfamily protein


Gene families : OG0000374 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000374_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G24870

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00058640 evm_27.TU.AmTr_v1... Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.06 OrthoFinder output from all 47 species
Azfi_s0079.g038411 No alias not classified & original description: CDS=856-2112 0.02 OrthoFinder output from all 47 species
Dcu_g10341 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dcu_g41510 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01025655001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
GSVIVT01035519001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Sam_g51157 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Smo89607 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Tin_g31415 No alias RING-H2-class CTL-subclass E3 ubiquiTin ligase &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005768 endosome IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006865 amino acid transport IEP HCCA
CC GO:0009543 chloroplast thylakoid lumen IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031977 thylakoid lumen IEP HCCA
CC GO:0031978 plastid thylakoid lumen IEP HCCA
CC GO:0031982 vesicle IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 467 509
No external refs found!