AMTR_s00001p00152770 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.137

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 1

Gene families : OG_01_0000599 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000599_tree ,
OG_02_0005403 (LandPlants) Phylogenetic Tree(s): OG_02_0005403_tree ,
OG_03_0005891 (SeedPlants) Phylogenetic Tree(s): OG_03_0005891_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00001p00152770
Cluster	HCCA: Cluster_159

Target	Alias	Description	ECC score	Gene Family Method
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.15	Archaeplastida
Cpa\|evm.model.tig00022075.5	No alias	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana	0.03	Archaeplastida
Cpa\|evm.model.tig00022075.6	No alias	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana	0.07	Archaeplastida
GSVIVT01008740001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.07	Archaeplastida
Gb_06029	No alias	subunit 1 of Pol II RNA polymerase	0.05	Archaeplastida
Gb_33197	No alias	subunit 1 of Pol II RNA polymerase	0.13	Archaeplastida
LOC_Os02g05880.1	No alias	subunit 1 of Pol V RNA polymerase	0.02	Archaeplastida
LOC_Os05g05860.1	No alias	subunit 1 of Pol II RNA polymerase	0.03	Archaeplastida
MA_10436091g0010	No alias	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis...	0.04	Archaeplastida
MA_8544g0010	No alias	subunit 1 of Pol II RNA polymerase	0.05	Archaeplastida
Mp3g15530.1	No alias	subunit 1 of Pol IV RNA polymerase. subunit 1 of Pol V...	0.02	Archaeplastida
Mp4g14340.1	No alias	subunit 1 of Pol II RNA polymerase	0.04	Archaeplastida
Pp3c15_5270V3.1	No alias	nuclear RNA polymerase D1B	0.06	Archaeplastida
Pp3c17_4860V3.1	No alias	nuclear RNA polymerase C1	0.03	Archaeplastida
Pp3c1_32300V3.1	No alias	RNA polymerase II large subunit	0.07	Archaeplastida
Smo110201	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	Archaeplastida
Zm00001e007729_P001	No alias	subunit 1 of Pol III RNA polymerase	0.02	Archaeplastida
Zm00001e040236_P001	No alias	subunit 1 of Pol II RNA polymerase	0.03	Archaeplastida
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.15	LandPlants
GSVIVT01008740001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.07	LandPlants
Gb_06029	No alias	subunit 1 of Pol II RNA polymerase	0.04	LandPlants
Gb_33197	No alias	subunit 1 of Pol II RNA polymerase	0.13	LandPlants
LOC_Os05g05860.1	No alias	subunit 1 of Pol II RNA polymerase	0.02	LandPlants
MA_8544g0010	No alias	subunit 1 of Pol II RNA polymerase	0.05	LandPlants
Mp4g14340.1	No alias	subunit 1 of Pol II RNA polymerase	0.03	LandPlants
Pp3c1_32300V3.1	No alias	RNA polymerase II large subunit	0.05	LandPlants
Smo110201	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	LandPlants
Zm00001e040236_P001	No alias	subunit 1 of Pol II RNA polymerase	0.03	LandPlants
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.15	SeedPlants
GSVIVT01008740001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.07	SeedPlants
Gb_06029	No alias	subunit 1 of Pol II RNA polymerase	0.04	SeedPlants
Gb_33197	No alias	subunit 1 of Pol II RNA polymerase	0.12	SeedPlants
LOC_Os05g05860.1	No alias	subunit 1 of Pol II RNA polymerase	0.02	SeedPlants
MA_8544g0010	No alias	subunit 1 of Pol II RNA polymerase	0.04	SeedPlants
Zm00001e040236_P001	No alias	subunit 1 of Pol II RNA polymerase	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005665	RNA polymerase II, core complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007083	RNA_pol_Rpb1_4	717	821
IPR007066	RNA_pol_Rpb1_3	527	690
IPR007081	RNA_pol_Rpb1_5	828	1418
IPR000722	RNA_pol_asu	355	523
IPR007073	RNA_pol_Rpb1_7	1163	1297
IPR000684	RNA_pol_II_repeat_euk	1553	1566
IPR000684	RNA_pol_II_repeat_euk	1817	1829
IPR000684	RNA_pol_II_repeat_euk	1721	1734
IPR000684	RNA_pol_II_repeat_euk	1679	1692
IPR000684	RNA_pol_II_repeat_euk	1707	1720
IPR000684	RNA_pol_II_repeat_euk	1665	1678
IPR000684	RNA_pol_II_repeat_euk	1637	1650
IPR000684	RNA_pol_II_repeat_euk	1595	1608
IPR000684	RNA_pol_II_repeat_euk	1693	1706
IPR000684	RNA_pol_II_repeat_euk	1728	1741
IPR000684	RNA_pol_II_repeat_euk	1651	1664
IPR000684	RNA_pol_II_repeat_euk	1567	1580
IPR000684	RNA_pol_II_repeat_euk	1775	1788
IPR000684	RNA_pol_II_repeat_euk	1581	1594
IPR000684	RNA_pol_II_repeat_euk	1609	1622
IPR000684	RNA_pol_II_repeat_euk	1623	1636
IPR007080	RNA_pol_Rpb1_1	14	353
IPR007075	RNA_pol_Rpb1_6	894	1078

External Links

No external refs found!

AMTR_s00001p00152770 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation