AT5G22760

Description : PHD finger family protein

Gene families : OG0003668 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003668_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G22760

Target	Alias	Description	ECC score	Gene Family Method
Adi_g107345	No alias	PHD finger transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g07239	No alias	PHD finger transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g26643	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g18326	No alias	PHD finger transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene10761.t1	Aspi01Gene10761	PHD finger transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cre05.g247000	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dcu_g40975	No alias	PHD finger transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g08699	No alias	PHD finger transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01037231001	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.03	OrthoFinder output from all 47 species
Lfl_g05757	No alias	PHD finger transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g11538	No alias	PHD finger transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Mp4g03480.1	No alias	PHD finger transcription factor	0.03	OrthoFinder output from all 47 species
Pnu_g20406	No alias	PHD finger transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003692	No alias	PHD finger transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Smo441144	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0010498	proteasomal protein catabolic process	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030126	COPI vesicle coat	IEP	HCCA
BP	GO:0030163	protein catabolic process	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
BP	GO:0046364	monosaccharide biosynthetic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR028942	WHIM1_dom	300	333
IPR018501	DDT_dom	188	240
IPR019787	Znf_PHD-finger	416	459

External Links

No external refs found!

AT5G22760

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation