AT5G18550

Description : Zinc finger C-x8-C-x5-C-x3-H type family protein

Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G18550

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene00104.t1	ZFN1, Aspi01Gene00104	regulatory protein of RNA homeostasis & original...	0.01	OrthoFinder output from all 47 species
Aspi01Gene03268.t1	ZFN1, Aspi01Gene03268	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene59536.t1	Aspi01Gene59536	regulatory protein of RNA homeostasis & original...	0.01	OrthoFinder output from all 47 species
Dde_g21482	No alias	regulatory protein of RNA homeostasis & original...	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004320	ZFN1	regulatory protein of RNA homeostasis & original...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000571	Znf_CCCH	53	78
IPR000571	Znf_CCCH	147	171
IPR000571	Znf_CCCH	99	124
IPR000571	Znf_CCCH	348	371
IPR000571	Znf_CCCH	303	327

External Links

No external refs found!

AT5G18550

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation