AT5G18100 (CSD3)

Aliases : CSD3

Description : copper/zinc superoxide dismutase 3

Gene families : OG0000525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000525_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G18100

Target	Alias	Description	ECC score	Gene Family Method	Actions
Len_g10970	CSD1	EC_1.15 oxidoreductase acting on superoxide as acceptor...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000302	response to reactive oxygen species	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004784	superoxide dismutase activity	ISS	Interproscan
MF	GO:0004784	superoxide dismutase activity	IBA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	IBA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	IBA	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
CC	GO:0005777	peroxisome	IDA	Interproscan
CC	GO:0005777	peroxisome	NAS	Interproscan
BP	GO:0006801	superoxide metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006979	response to oxidative stress	IEP	Interproscan
BP	GO:0006979	response to oxidative stress	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IBA	Interproscan
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009642	response to light intensity	None	Extended
BP	GO:0009644	response to high light intensity	None	Extended
BP	GO:0009651	response to salt stress	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010193	response to ozone	None	Extended
BP	GO:0010224	response to UV-B	None	Extended
MF	GO:0016209	antioxidant activity	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	None	Extended
BP	GO:0019430	removal of superoxide radicals	IBA	Interproscan
BP	GO:0019430	removal of superoxide radicals	IC	Interproscan
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034599	cellular response to oxidative stress	None	Extended
BP	GO:0034614	cellular response to reactive oxygen species	None	Extended
BP	GO:0034644	cellular response to UV	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042579	microbody	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0055114	obsolete oxidation-reduction process	IBA	Interproscan
BP	GO:0062197	cellular response to chemical stress	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071457	cellular response to ozone	IEP	Interproscan
BP	GO:0071470	cellular response to osmotic stress	None	Extended
BP	GO:0071472	cellular response to salt stress	IEP	Interproscan
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	None	Extended
BP	GO:0071484	cellular response to light intensity	IEP	Interproscan
BP	GO:0071486	cellular response to high light intensity	IEP	Interproscan
BP	GO:0071493	cellular response to UV-B	IEP	Interproscan
BP	GO:0072593	reactive oxygen species metabolic process	None	Extended
BP	GO:0098754	detoxification	None	Extended
BP	GO:0098869	cellular oxidant detoxification	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1901701	cellular response to oxygen-containing compound	None	Extended
BP	GO:1990748	cellular detoxification	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003725	double-stranded RNA binding	IEP	HCCA
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	HCCA
MF	GO:0005402	carbohydrate:monoatomic cation symporter activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
CC	GO:0010287	plastoglobule	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001424	SOD_Cu_Zn_dom	17	154

External Links

No external refs found!

AT5G18100 (CSD3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation