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  5. AT5G17410

AT5G17410


Description : Spc97 / Spc98 family of spindle pole body (SBP) component


Gene families : OG0004097 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G17410

Target Alias Description ECC score Gene Family Method Actions
Adi_g057860 No alias component *(GCP2) of gamma-Tubulin ring complex &... 0.03 OrthoFinder output from all 47 species
Ala_g05311 No alias component *(GCP2) of gamma-Tubulin ring complex &... 0.03 OrthoFinder output from all 47 species
Cba_g66832 No alias component *(GCP2) of gamma-Tubulin ring complex &... 0.04 OrthoFinder output from all 47 species
Ceric.13G015300.1 Ceric.13G015300 component *(GCP2) of gamma-Tubulin ring complex &... 0.04 OrthoFinder output from all 47 species
GSVIVT01032444001 No alias Cytoskeleton.microtubular network.microtubule Tubulin... 0.05 OrthoFinder output from all 47 species
Pir_g14780 No alias component *(GCP2) of gamma-Tubulin ring complex &... 0.02 OrthoFinder output from all 47 species
Pnu_g08041 No alias component *(GCP2) of gamma-Tubulin ring complex &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0175.g024576 No alias component *(GCP2) of gamma-Tubulin ring complex &... 0.03 OrthoFinder output from all 47 species
Sam_g25647 No alias component *(GCP2) of gamma-Tubulin ring complex &... 0.02 OrthoFinder output from all 47 species
Sam_g34477 No alias component *(GCP2) of gamma-Tubulin ring complex &... 0.03 OrthoFinder output from all 47 species
Smo78743 No alias Cytoskeleton.microtubular network.microtubule Tubulin... 0.04 OrthoFinder output from all 47 species
Solyc02g081460.4.1 Solyc02g081460 component GCP2 of gamma-Tubulin ring complex (gamma-TuRC) 0.03 OrthoFinder output from all 47 species
Tin_g06784 No alias component *(GCP2) of gamma-Tubulin ring complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e041169_P001 Zm00001e041169 component GCP2 of gamma-Tubulin ring complex (gamma-TuRC) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000059 obsolete protein import into nucleus, docking IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0002376 immune system process IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005768 endosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006379 mRNA cleavage IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006611 protein export from nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007020 microtubule nucleation IEP HCCA
BP GO:0007021 tubulin complex assembly IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007154 cell communication IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008373 sialyltransferase activity IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009626 plant-type hypersensitive response IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP HCCA
BP GO:0009954 proximal/distal pattern formation IEP HCCA
BP GO:0009955 adaxial/abaxial pattern specification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010155 regulation of proton transport IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010305 leaf vascular tissue pattern formation IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010589 leaf proximal/distal pattern formation IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0012501 programmed cell death IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
BP GO:0031935 obsolete regulation of chromatin silencing IEP HCCA
CC GO:0031982 vesicle IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0034050 programmed cell death induced by symbiont IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0035195 miRNA-mediated gene silencing IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
MF GO:0035197 siRNA binding IEP HCCA
MF GO:0035198 miRNA binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043207 response to external biotic stimulus IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044403 biological process involved in symbiotic interaction IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048468 cell development IEP HCCA
BP GO:0048830 adventitious root development IEP HCCA
BP GO:0048864 stem cell development IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051702 biological process involved in interaction with symbiont IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
MF GO:0061980 regulatory RNA binding IEP HCCA
BP GO:0065001 specification of axis polarity IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1904062 regulation of monoatomic cation transmembrane transport IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR040457 GCP_C 362 668
No external refs found!