AT5G16680

Description : RING/FYVE/PHD zinc finger superfamily protein

Gene families : OG0001249 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001249_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G16680

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00149p00102010	evm_27.TU.AmTr_v1...	No description available	0.08	OrthoFinder output from all 47 species
Aev_g02613	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.02	OrthoFinder output from all 47 species
Aev_g04196	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.05	OrthoFinder output from all 47 species
Aev_g25598	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g11357	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.1	OrthoFinder output from all 47 species
Ala_g26817	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Ala_g33738	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g01217	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.08	OrthoFinder output from all 47 species
Aob_g12429	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.08	OrthoFinder output from all 47 species
Aob_g21390	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.03	OrthoFinder output from all 47 species
Aob_g41453	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.03	OrthoFinder output from all 47 species
Aop_g33239	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g35960	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.02	OrthoFinder output from all 47 species
Aspi01Gene14039.t1	Aspi01Gene14039	regulatory component *(AIPP2) of chromatin silencing...	0.03	OrthoFinder output from all 47 species
Aspi01Gene24232.t1	Aspi01Gene24232	regulatory component *(AIPP2) of chromatin silencing...	0.03	OrthoFinder output from all 47 species
Aspi01Gene24234.t1	Aspi01Gene24234	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0080.g038469	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.11	OrthoFinder output from all 47 species
Ceric.07G096800.1	Ceric.07G096800	regulatory component *(AIPP2) of chromatin silencing...	0.05	OrthoFinder output from all 47 species
Ceric.09G080200.1	Ceric.09G080200	regulatory component *(AIPP2) of chromatin silencing...	0.04	OrthoFinder output from all 47 species
Dac_g02364	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g08331	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.09	OrthoFinder output from all 47 species
Dcu_g17316	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.05	OrthoFinder output from all 47 species
Ehy_g02970	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01024330001	No alias	No description available	0.06	OrthoFinder output from all 47 species
Gb_18601	No alias	no hits & (original description: none)	0.08	OrthoFinder output from all 47 species
Gb_40677	No alias	no hits & (original description: none)	0.08	OrthoFinder output from all 47 species
LOC_Os10g42196.1	LOC_Os10g42196	no hits & (original description: none)	0.08	OrthoFinder output from all 47 species
LOC_Os11g18770.1	LOC_Os11g18770	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os12g24540.1	LOC_Os12g24540	no hits & (original description: none)	0.08	OrthoFinder output from all 47 species
Len_g35705	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.07	OrthoFinder output from all 47 species
Lfl_g17806	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.06	OrthoFinder output from all 47 species
MA_106351g0010	No alias	no hits & (original description: none)	0.18	OrthoFinder output from all 47 species
MA_62806g0010	No alias	no hits & (original description: none)	0.13	OrthoFinder output from all 47 species
Mp6g14570.1	No alias	no hits & (original description: none)	0.09	OrthoFinder output from all 47 species
Msp_g25774	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.07	OrthoFinder output from all 47 species
Nbi_g05019	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.02	OrthoFinder output from all 47 species
Ore_g41526	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.04	OrthoFinder output from all 47 species
Pir_g19125	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.05	OrthoFinder output from all 47 species
Ppi_g32877	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.04	OrthoFinder output from all 47 species
Sam_g36098	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.07	OrthoFinder output from all 47 species
Smo439529	No alias	No description available	0.08	OrthoFinder output from all 47 species
Spa_g49012	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g49748	No alias	regulatory component *(AIPP2) of chromatin silencing...	0.09	OrthoFinder output from all 47 species
Zm00001e029823_P001	Zm00001e029823	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0006486	protein glycosylation	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043413	macromolecule glycosylation	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070085	glycosylation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	HCCA
BP	GO:0000723	telomere maintenance	IEP	HCCA
CC	GO:0000932	P-body	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
CC	GO:0005778	peroxisomal membrane	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006862	nucleotide transport	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	HCCA
BP	GO:0007131	reciprocal meiotic recombination	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
MF	GO:0008195	phosphatidate phosphatase activity	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010029	regulation of seed germination	IEP	HCCA
BP	GO:0010030	positive regulation of seed germination	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
BP	GO:0010212	response to ionizing radiation	IEP	HCCA
BP	GO:0010332	response to gamma radiation	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0015748	organophosphate ester transport	IEP	HCCA
BP	GO:0015865	purine nucleotide transport	IEP	HCCA
BP	GO:0015868	purine ribonucleotide transport	IEP	HCCA
BP	GO:0015916	fatty-acyl-CoA transport	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
BP	GO:0016036	cellular response to phosphate starvation	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016441	post-transcriptional gene silencing	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
BP	GO:0017148	negative regulation of translation	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0031048	RNA-mediated heterochromatin formation	IEP	HCCA
CC	GO:0031903	microbody membrane	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0032204	regulation of telomere maintenance	IEP	HCCA
BP	GO:0032504	multicellular organism reproduction	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034249	negative regulation of amide metabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
BP	GO:0035195	miRNA-mediated gene silencing	IEP	HCCA
BP	GO:0035278	miRNA-mediated gene silencing by inhibition of translation	IEP	HCCA
CC	GO:0035770	ribonucleoprotein granule	IEP	HCCA
BP	GO:0035825	homologous recombination	IEP	HCCA
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	HCCA
BP	GO:0042886	amide transport	IEP	HCCA
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
CC	GO:0046861	glyoxysomal membrane	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048582	positive regulation of post-embryonic development	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0051094	positive regulation of developmental process	IEP	HCCA
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051248	negative regulation of protein metabolic process	IEP	HCCA
BP	GO:0051503	adenine nucleotide transport	IEP	HCCA
BP	GO:0061982	meiosis I cell cycle process	IEP	HCCA
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0072348	sulfur compound transport	IEP	HCCA
BP	GO:0080129	proteasome core complex assembly	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0098813	nuclear chromosome segregation	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
BP	GO:0140527	reciprocal homologous recombination	IEP	HCCA
BP	GO:1900140	regulation of seedling development	IEP	HCCA
BP	GO:1901264	carbohydrate derivative transport	IEP	HCCA
BP	GO:1901337	thioester transport	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G16680

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation