AT5G15200

Description : Ribosomal protein S4

Gene families : OG0001396 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001396_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G15200

Target	Alias	Description	ECC score	Gene Family Method
Adi_g043204	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Adi_g066051	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Adi_g089470	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Adi_g123983	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aev_g06382	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Aev_g06508	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ala_g15543	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Als_g11247	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Als_g18137	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Als_g27354	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aob_g00657	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aop_g04820	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Aop_g06152	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.23	OrthoFinder output from all 47 species
Aspi01Gene14214.t1	Aspi01Gene14214	component *(uS4) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0076.g037857	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Azfi_s0276.g061449	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Azfi_s0400.g068238	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Cba_g08584	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cba_g21305	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cba_g34731	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g37185	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.04G104600.1	Ceric.04G104600	component *(uS4) of small ribosomal-subunit (SSU)...	0.36	OrthoFinder output from all 47 species
Ceric.20G045700.1	Ceric.20G045700	component *(uS4) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000826.24	No alias	40S ribosomal protein S9-1 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
Cre08.g359750	No alias	40S ribosomal protein S9-1 OS=Arabidopsis thaliana	0.42	OrthoFinder output from all 47 species
Dac_g01253	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dac_g05573	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Dac_g13577	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.32	OrthoFinder output from all 47 species
Dcu_g13407	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Dde_g15177	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dde_g15335	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g05268	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ehy_g05433	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
GSVIVT01008028001	No alias	40S ribosomal protein S9-2 OS=Arabidopsis thaliana	0.21	OrthoFinder output from all 47 species
GSVIVT01011384001	No alias	40S ribosomal protein S9-2 OS=Arabidopsis thaliana	0.42	OrthoFinder output from all 47 species
GSVIVT01020020001	No alias	40S ribosomal protein S9-2 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
Gb_19294	No alias	component RPS9 of SSU proteome	0.03	OrthoFinder output from all 47 species
Gb_41315	No alias	component RPS9 of SSU proteome	0.3	OrthoFinder output from all 47 species
LOC_Os03g05980.1	LOC_Os03g05980	component RPS9 of SSU proteome	0.48	OrthoFinder output from all 47 species
LOC_Os11g38959.1	LOC_Os11g38959	component RPS9 of SSU proteome	0.36	OrthoFinder output from all 47 species
Len_g10000	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Len_g18169	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g28416	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g29831	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
MA_10429805g0030	No alias	component RPS9 of SSU proteome	0.16	OrthoFinder output from all 47 species
MA_10431745g0020	No alias	component RPS9 of SSU proteome	0.16	OrthoFinder output from all 47 species
Mp3g00520.1	No alias	component RPS9 of SSU proteome	0.48	OrthoFinder output from all 47 species
Mp6g10930.1	No alias	component RPS9 of SSU proteome	0.4	OrthoFinder output from all 47 species
Msp_g17653	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Msp_g37588	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Nbi_g05644	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Nbi_g11040	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Ore_g27809	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ore_g33669	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ore_g33670	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Pir_g07949	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Pir_g48916	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Pp3c12_9190V3.1	Pp3c12_9190	Ribosomal protein S4	0.09	OrthoFinder output from all 47 species
Pp3c13_19780V3.1	Pp3c13_19780	Ribosomal protein S4	0.21	OrthoFinder output from all 47 species
Pp3c3_23720V3.1	Pp3c3_23720	Ribosomal protein S4	0.18	OrthoFinder output from all 47 species
Pp3c4_15290V3.1	Pp3c4_15290	Ribosomal protein S4	0.2	OrthoFinder output from all 47 species
Ppi_g27129	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ppi_g57688	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g018027	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0187.g025128	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g09460	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Sam_g13332	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g24238	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.19	OrthoFinder output from all 47 species
Smo157263	No alias	40S ribosomal protein S9-2 OS=Arabidopsis thaliana	0.17	OrthoFinder output from all 47 species
Smo74302	No alias	40S ribosomal protein S9-1 OS=Arabidopsis thaliana	0.19	OrthoFinder output from all 47 species
Solyc01g010540.3.1	Solyc01g010540	component RPS9 of SSU proteome	0.33	OrthoFinder output from all 47 species
Solyc01g010580.3.1	Solyc01g010580	component RPS9 of SSU proteome	0.2	OrthoFinder output from all 47 species
Solyc04g005680.4.1	Solyc04g005680	component RPS9 of SSU proteome	0.43	OrthoFinder output from all 47 species
Solyc05g007250.3.1	Solyc05g007250	component RPS9 of SSU proteome	0.54	OrthoFinder output from all 47 species
Spa_g05705	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Spa_g05706	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Spa_g11414	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Spa_g19070	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Tin_g09675	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.25	OrthoFinder output from all 47 species
Tin_g13815	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.27	OrthoFinder output from all 47 species
Tin_g20253	No alias	component *(uS4) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Zm00001e010819_P002	Zm00001e010819	component RPS9 of SSU proteome	0.53	OrthoFinder output from all 47 species
Zm00001e018345_P001	Zm00001e018345	component RPS9 of SSU proteome	0.32	OrthoFinder output from all 47 species
Zm00001e037961_P002	Zm00001e037961	component RPS9 of SSU proteome	0.34	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	HCCA
BP	GO:0010043	response to zinc ion	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048467	gynoecium development	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
BP	GO:0048569	post-embryonic animal organ development	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001912	Ribosomal_S4/S9_N	18	64
IPR002942	S4_RNA-bd	109	152

External Links

No external refs found!

AT5G15200

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation