1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G11890

AT5G11890


Description : FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).


Gene families : OG0000261 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000261_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G11890

Target Alias Description ECC score Gene Family Method Actions
AT1G17620 No alias Late embryogenesis abundant (LEA) hydroxyproline-rich... 0.04 OrthoFinder output from all 47 species
AT3G11660 NHL1 NDR1/HIN1-like 1 0.04 OrthoFinder output from all 47 species
Aev_g07623 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g51512 NHL25 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g52160 NHL10, YLS9, ATNHL10 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35580.t1 NHL10, YLS9,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g21088 NHL10, YLS9, ATNHL10 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21432 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01037448001 No alias NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_01970 NHL25 NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_41030 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os01g39290.1 LOC_Os01g39290 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os05g11010.1 LOC_Os05g11010 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g19832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g21770 NHL25 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g27901 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_313447g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_63890g0010 No alias NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc10g150145.1.1 NHL1, Solyc10g150145 NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc12g095980.2.1 Solyc12g095980 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g00670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e025983_P001 Zm00001e025983 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
CC GO:0005829 cytosol IEP HCCA

No InterPro domains available for this sequence

No external refs found!