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AT5G09450


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G09450

Target Alias Description ECC score Gene Family Method Actions
LOC_Os12g07260.1 PPR596, LOC_Os12g07260 RNA editing factor (POCO) 0.03 OrthoFinder output from all 47 species
MA_492314g0010 No alias RNA editing factor (POCO) 0.02 OrthoFinder output from all 47 species
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
Solyc12g020050.2.1 PPR596, Solyc12g020050 RNA editing factor (POCO) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 193 238
IPR002885 Pentatricopeptide_repeat 158 185
IPR002885 Pentatricopeptide_repeat 336 363
No external refs found!