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AT5G08710


Description : Regulator of chromosome condensation (RCC1) family protein


Gene families : OG0001540 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001540_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G08710
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021098.32 UVR8 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding ISS Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009662 etioplast organization IEP HCCA
BP GO:0016108 tetraterpenoid metabolic process IEP HCCA
BP GO:0016109 tetraterpenoid biosynthetic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
BP GO:0016116 carotenoid metabolic process IEP HCCA
BP GO:0016117 carotenoid biosynthetic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
MF GO:0046608 carotenoid isomerase activity IEP HCCA
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 318 367
IPR000408 Reg_chr_condens 102 149
IPR000408 Reg_chr_condens 388 430
IPR000408 Reg_chr_condens 152 203
IPR000408 Reg_chr_condens 54 97
IPR000408 Reg_chr_condens 207 263
No external refs found!