AT5G08610

Description : P-loop containing nucleoside triphosphate hydrolases superfamily protein

Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G08610
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00107p00082420	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Adi_g059684	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g18916	No alias	mRNA helicase *(RH31) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g06941	No alias	mRNA helicase *(RH31) & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0009.g011827	No alias	mRNA helicase *(RH31) & original description: CDS=535-2991	0.04	OrthoFinder output from all 47 species
Ceric.27G031500.1	Ceric.27G031500	not classified & original description: pacid=50605423...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020713.11	No alias	Probable DEAD-box ATP-dependent RNA helicase 48...	0.01	OrthoFinder output from all 47 species
Dac_g12157	No alias	mRNA helicase *(RH31) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g06438	No alias	mRNA helicase *(RH31) & original description: none	0.06	OrthoFinder output from all 47 species
LOC_Os01g43120.1	LOC_Os01g43120	DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
LOC_Os02g57980.1	LOC_Os02g57980	DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Len_g12117	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g24172	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10300	No alias	mRNA helicase *(RH31) & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g30282	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g01045	No alias	mRNA helicase *(RH31) & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g53381	No alias	mRNA helicase *(RH31) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g13628	No alias	mRNA helicase *(RH31) & original description: none	0.02	OrthoFinder output from all 47 species
Smo174634	No alias	DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
Solyc01g095740.4.1	Solyc01g095740	DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis...	0.13	OrthoFinder output from all 47 species
Spa_g07287	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g12179	No alias	mRNA helicase *(RH31) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g18878	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e016261_P001	Zm00001e016261	DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Zm00001e020452_P002	Zm00001e020452	DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa...	0.07	OrthoFinder output from all 47 species
Zm00001e037076_P003	Zm00001e037076	DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006220	pyrimidine nucleotide metabolic process	None	Extended
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	None	Extended
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0004556	alpha-amylase activity	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006268	DNA unwinding involved in DNA replication	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0009658	chloroplast organization	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016160	amylase activity	IEP	HCCA
BP	GO:0016556	mRNA modification	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031425	chloroplast RNA processing	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
BP	GO:0042780	tRNA 3'-end processing	IEP	HCCA
MF	GO:0042781	3'-tRNA processing endoribonuclease activity	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	632	735
IPR011545	DEAD/DEAH_box_helicase_dom	407	584

External Links

No external refs found!

AT5G08610

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation