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  5. AT5G07930

AT5G07930 (MCT2)


Aliases : MCT2

Description : MEI2 C-terminal RRM only like 2


Gene families : OG0003402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003402_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G07930
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00120470 TEL1,... Protein terminal ear1 homolog OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
Aspi01Gene40898.t1 TEL1, Aspi01Gene40898 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0090.g042632 TEL1 not classified & original description: CDS=1-3177 0.03 OrthoFinder output from all 47 species
Ceric.02G098500.1 TEL1, Ceric.02G098500 not classified & original description: pacid=50585133... 0.03 OrthoFinder output from all 47 species
Ceric.21G063900.1 TEL1, Ceric.21G063900 not classified & original description: pacid=50602943... 0.07 OrthoFinder output from all 47 species
Ceric.39G026900.1 TEL1, Ceric.39G026900 not classified & original description: pacid=50582960... 0.08 OrthoFinder output from all 47 species
Dcu_g18906 TEL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000583001 TEL1 Protein terminal ear1 homolog OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
GSVIVT01003988001 TEL1 Protein terminal ear1 OS=Zea mays 0.03 OrthoFinder output from all 47 species
GSVIVT01008932001 MCT1 Protein terminal ear1 homolog OS=Oryza sativa subsp. indica 0.09 OrthoFinder output from all 47 species
GSVIVT01024201001 MCT2 Protein terminal ear1 OS=Zea mays 0.04 OrthoFinder output from all 47 species
Gb_20291 TEL1 Protein terminal ear1 homolog OS=Oryza sativa subsp.... 0.05 OrthoFinder output from all 47 species
Gb_21853 TEL1 Protein terminal ear1 OS=Zea mays (sp|o65001|te1_maize : 205.0) 0.03 OrthoFinder output from all 47 species
Gb_33381 TEL1 Protein terminal ear1 OS=Zea mays (sp|o65001|te1_maize : 198.0) 0.04 OrthoFinder output from all 47 species
LOC_Os01g68000.1 TEL1, LOC_Os01g68000 Protein terminal ear1 homolog OS=Oryza sativa subsp.... 0.08 OrthoFinder output from all 47 species
LOC_Os09g36140.1 TEL1, LOC_Os09g36140 Protein MEI2-like 6 OS=Oryza sativa subsp. japonica... 0.08 OrthoFinder output from all 47 species
MA_68449g0010 TEL1 Protein terminal ear1 homolog OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Solyc01g110200.2.1 MCT2, Solyc01g110200 Protein terminal ear1 homolog OS=Oryza sativa subsp.... 0.07 OrthoFinder output from all 47 species
Solyc05g013930.2.1 TEL1, Solyc05g013930 Protein terminal ear1 OS=Zea mays (sp|o65001|te1_maize : 355.0) 0.08 OrthoFinder output from all 47 species
Solyc05g056360.2.1 MCT1, Solyc05g056360 Protein terminal ear1 homolog OS=Oryza sativa subsp.... 0.13 OrthoFinder output from all 47 species
Spa_g12309 TEL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g44662 TEL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e018912_P001 TEL1, Zm00001e018912 Protein terminal ear1 OS=Zea mays (sp|o65001|te1_maize : 874.0) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006623 protein targeting to vacuole IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008429 phosphatidylethanolamine binding IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009873 ethylene-activated signaling pathway IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009910 negative regulation of flower development IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
BP GO:0009962 regulation of flavonoid biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031537 regulation of anthocyanin metabolic process IEP HCCA
BP GO:0031540 regulation of anthocyanin biosynthetic process IEP HCCA
BP GO:0042752 regulation of circadian rhythm IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0048581 negative regulation of post-embryonic development IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051093 negative regulation of developmental process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051241 negative regulation of multicellular organismal process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0072665 protein localization to vacuole IEP HCCA
BP GO:0072666 establishment of protein localization to vacuole IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090344 obsolete negative regulation of cell aging IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000242 negative regulation of reproductive process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007201 Mei2-like_Rrm_C 135 241
No external refs found!