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  5. AT5G06210

AT5G06210


Description : RNA binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G06210
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00103290 evm_27.TU.AmTr_v1... Organelle RRM domain-containing protein 2, mitochondrial... 0.03 OrthoFinder output from all 47 species
AMTR_s00114p00125610 evm_27.TU.AmTr_v1... Small RNA-binding protein 11, chloroplastic... 0.02 OrthoFinder output from all 47 species
Adi_g056501 GR-RBP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15568.t1 ATRZ-1A, Aspi01Gene15568 RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0116.g046316 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: CDS=161-592 0.04 OrthoFinder output from all 47 species
Ehy_g16429 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os08g04440.1 LOC_Os08g04440 RNA editing factor (ORRM) 0.04 OrthoFinder output from all 47 species
Lfl_g02645 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g31408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23493 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e018330_P004 GR-RBP3, Zm00001e018330 RNA editing factor (ORRM) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009119 ribonucleoside metabolic process IEP HCCA
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0042278 purine nucleoside metabolic process IEP HCCA
BP GO:0046085 adenosine metabolic process IEP HCCA
BP GO:0046128 purine ribonucleoside metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 36 105
No external refs found!