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  5. Pnu_g31043

Pnu_g31043 (LHCA2)


Aliases : LHCA2

Description : non-photochemical quenching LhcSR protein & original description: none


Gene families : OG0009764 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009764_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g31043
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Als_g61396 LHCA2*1, LHCA6 non-photochemical quenching LhcSR protein & original... 0.14 OrthoFinder output from all 47 species
Aob_g09442 LHCA2 non-photochemical quenching LhcSR protein & original... 0.04 OrthoFinder output from all 47 species
Aop_g15836 LHCA2*1, LHCA6 non-photochemical quenching LhcSR protein & original... 0.11 OrthoFinder output from all 47 species
Cre08.g365900 LHCA2 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Cre08.g367400 LHCA2 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Cre08.g367500 LHCA2 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Ppi_g08578 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Ppi_g10166 LHCA1 non-photochemical quenching LhcSR protein & original... 0.11 OrthoFinder output from all 47 species
Ppi_g15204 LHCA2*1, LHCA6 non-photochemical quenching LhcSR protein & original... 0.09 OrthoFinder output from all 47 species
Ppi_g27533 LHCA2 non-photochemical quenching LhcSR protein & original... 0.06 OrthoFinder output from all 47 species
Ppi_g57546 LHCA2 non-photochemical quenching LhcSR protein & original... 0.06 OrthoFinder output from all 47 species
Ppi_g63943 LHCA2*1, LHCA6 non-photochemical quenching LhcSR protein & original... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 59 223
No external refs found!