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  5. AT5G03340

AT5G03340


Description : ATPase, AAA-type, CDC48 protein


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G03340

Target Alias Description ECC score Gene Family Method Actions
Als_g39841 CDC48A, CDC48, ATCDC48 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene67370.t1 Aspi01Gene67370 platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16600 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67891 CDC48A, CDC48, ATCDC48 platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G014100.1 Ceric.14G014100 platform ATPase CDC48 & original description:... 0.01 OrthoFinder output from all 47 species
Dde_g22951 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
MA_179420g0010 emb1354, CDC48C Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species
Nbi_g13202 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40907 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01985 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16719 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18794 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12429 No alias platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Solyc10g084050.2.1 Solyc10g084050 platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
Spa_g22537 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005618 cell wall IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005794 Golgi apparatus IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
MF GO:0016887 ATP hydrolysis activity ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006446 regulation of translational initiation IEP HCCA
BP GO:0006625 protein targeting to peroxisome IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0015919 peroxisomal membrane transport IEP HCCA
BP GO:0016558 protein import into peroxisome matrix IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043574 peroxisomal transport IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046777 protein autophosphorylation IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072662 protein localization to peroxisome IEP HCCA
BP GO:0072663 establishment of protein localization to peroxisome IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 244 373
IPR003959 ATPase_AAA_core 517 650
IPR003338 CDC4_N-term_subdom 29 110
IPR004201 Cdc48_dom2 131 194
No external refs found!