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  5. AT5G01660

AT5G01660


Description : CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink).


Gene families : OG0000085 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000085_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G01660
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
Adi_g071576 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22744 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26210.t1 Aspi01Gene26210 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03364 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G040700.1 Ceric.18G040700 not classified & original description: pacid=50621172... 0.02 OrthoFinder output from all 47 species
Ceric.20G045600.1 Ceric.20G045600 not classified & original description: pacid=50566430... 0.04 OrthoFinder output from all 47 species
Dac_g10245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g10259 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g21312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os06g07770.1 LOC_Os06g07770 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os11g32270.1 LOC_Os11g32270 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g49393 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16836 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g39767 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06177 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g20402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25333 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29449 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08253 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0048451 petal formation RCA Interproscan
BP GO:0048453 sepal formation RCA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010075 regulation of meristem growth IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
BP GO:0031048 RNA-mediated heterochromatin formation IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065001 specification of axis polarity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
InterPro domains Description Start Stop
IPR013989 Dev_and_cell_death_domain 19 146
IPR006652 Kelch_1 599 631
IPR006652 Kelch_1 462 501
IPR006652 Kelch_1 551 595
IPR006652 Kelch_1 508 548
IPR006652 Kelch_1 410 455
No external refs found!