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  5. AT5G01110

AT5G01110


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0002597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002597_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G01110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00080p00074320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g26680,... 0.02 OrthoFinder output from all 47 species
AT5G55840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
GSVIVT01010244001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
GSVIVT01012774001 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.02 OrthoFinder output from all 47 species
GSVIVT01018339001 No alias Putative pentatricopeptide repeat-containing protein... 0.09 OrthoFinder output from all 47 species
GSVIVT01025017001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_01582 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.07 OrthoFinder output from all 47 species
Gb_03162 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Gb_03188 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 OrthoFinder output from all 47 species
Gb_03214 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.06 OrthoFinder output from all 47 species
Gb_13926 No alias group-II intron mitochondrial splicing factor (MISF26) 0.06 OrthoFinder output from all 47 species
Gb_18022 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.03 OrthoFinder output from all 47 species
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.11 OrthoFinder output from all 47 species
Gb_23453 No alias Putative pentatricopeptide repeat-containing protein... 0.09 OrthoFinder output from all 47 species
Gb_41726 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.04 OrthoFinder output from all 47 species
LOC_Os04g38930.1 LOC_Os04g38930 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os06g36910.1 LOC_Os06g36910 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_111225g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_139384g0010 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.03 OrthoFinder output from all 47 species
MA_278706g0010 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.02 OrthoFinder output from all 47 species
MA_299481g0010 EMB2745 Pentatricopeptide repeat-containing protein At5g39710... 0.05 OrthoFinder output from all 47 species
MA_302333g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.05 OrthoFinder output from all 47 species
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.07 OrthoFinder output from all 47 species
MA_6175g0010 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.03 OrthoFinder output from all 47 species
MA_64750g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_774352g0010 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.04 OrthoFinder output from all 47 species
Solyc02g021270.3.1 Solyc02g021270 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Solyc11g073270.1.1 Solyc11g073270 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Zm00001e007886_P001 Zm00001e007886 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Zm00001e016768_P001 Zm00001e016768 group-II intron mitochondrial splicing factor (MISF26) 0.04 OrthoFinder output from all 47 species
Zm00001e016770_P001 Zm00001e016770 group-II intron mitochondrial splicing factor (MISF26) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0004619 phosphoglycerate mutase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 444 492
IPR002885 Pentatricopeptide_repeat 202 247
IPR002885 Pentatricopeptide_repeat 268 317
IPR002885 Pentatricopeptide_repeat 655 703
IPR002885 Pentatricopeptide_repeat 514 562
IPR002885 Pentatricopeptide_repeat 583 627
IPR002885 Pentatricopeptide_repeat 168 196
IPR002885 Pentatricopeptide_repeat 116 142
IPR002885 Pentatricopeptide_repeat 335 367
IPR002885 Pentatricopeptide_repeat 405 436
No external refs found!